CRISPRone

CRISPRone report for GCA_001555325.1_ASM155532v1

♦ Seq 1: LRZQ01000004.1 Pseudomonas aeruginosa strain AU9899 NODE_13_length_172440_cov_5.29723_ID_25, whole genome shotgun sequence

⇒Summary: seq-len = 172440 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 162297-172302 bp Zoom in on locus 1 x11 x8 CRISPR array Location: 162297-162925 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 162297-162925 bp Num of repeats: 11 Spacers: s1-s10 Gene: cd09718:cas1 Type: universal Location: 163185-164159 bp Gene: COG1203:cas3 Type: Type-I Location: 164156-167386 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 167797-169098 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 169085-170068 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 170079-171107 bp Gene: cd09739:cas6f Type: other Location: 171111-171674 bp CRISPR array Location: 171859-172302 bp Num of repeats: 8 Spacers: s11-s17 CRISPR array Location: 171859-172302 bp Num of repeats: 8 Spacers: s11-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 162297-162925 bp]: array | spacers
           [Locus range 171859-172302 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LRZQ01000001.1 Pseudomonas aeruginosa strain AU9899 NODE_10_length_232856_cov_6.21544_ID_19, whole genome shotgun sequence

⇒Summary: seq-len = 232822 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 154-602 bp Zoom in on locus 1 x8 CRISPR array Location: 154-602 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 154-602 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 154-602 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: LRZQ01000034.1 Pseudomonas aeruginosa strain AU9899 NODE_40_length_39291_cov_5.46508_ID_79, whole genome shotgun sequence

⇒Summary: seq-len = 39291 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 136-1064 bp Zoom in on locus 1 x16 CRISPR array Location: 136-1064 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 136-1064 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 136-1064 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: LRZQ01000006.1 Pseudomonas aeruginosa strain AU9899 NODE_15_length_165614_cov_5.91859_ID_29, whole genome shotgun sequence

⇒Summary: seq-len = 165614 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 165347-165494 bp Zoom in on locus 1 x3 CRISPR array Location: 165347-165494 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 165347-165494 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 165347-165494 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)