CRISPRone

CRISPRone report for GCA_001555415.1_ASM155541v1

♦ Seq 1: LSAG01000009.1 Pseudomonas aeruginosa strain AU14820 NODE_18_length_123679_cov_7.71302_ID_35, whole genome shotgun sequence

⇒Summary: seq-len = 123679 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 122595-123343 bp Zoom in on locus 1 x13 CRISPR array Location: 122595-123343 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 122595-123343 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 122595-123343 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LSAG01000003.1 Pseudomonas aeruginosa strain AU14820 NODE_12_length_228421_cov_6.71275_ID_23, whole genome shotgun sequence

⇒Summary: seq-len = 228421 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 179621-190220 bp Zoom in on locus 1 x10 x19 CRISPR array Location: 179621-180189 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 179621-180189 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09718:cas1 Type: universal Location: 180440-181414 bp Gene: COG1203:cas3 Type: Type-I Location: 181411-184641 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 185052-186353 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 186340-187323 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 187334-188362 bp Gene: cd09739:cas6f Type: other Location: 188366-188929 bp CRISPR array Location: 189113-190220 bp Num of repeats: 19 Spacers: s10-s27 CRISPR array Location: 189113-190220 bp Num of repeats: 19 Spacers: s10-s27 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 179621-180189 bp]: array | spacers
           [Locus range 189113-190220 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)