CRISPRone

CRISPRone report for GCA_001555455.1_ASM155545v1

♦ Seq 1: LSAH01000020.1 Pseudomonas aeruginosa strain AU17965 NODE_28_length_49147_cov_5.3941_ID_55, whole genome shotgun sequence

⇒Summary: seq-len = 49147 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 335-10934 bp Zoom in on locus 1 x10 x19 CRISPR array Location: 335-903 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 335-903 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09718:cas1 Type: universal Location: 1154-2128 bp Gene: COG1203:cas3 Type: Type-I Location: 2125-5355 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5766-7067 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7054-8037 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8048-9076 bp Gene: cd09739:cas6f Type: other Location: 9080-9643 bp CRISPR array Location: 9827-10934 bp Num of repeats: 19 Spacers: s10-s27 CRISPR array Location: 9827-10934 bp Num of repeats: 19 Spacers: s10-s27 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 335-903 bp]: array | spacers
           [Locus range 9827-10934 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LSAH01000006.1 Pseudomonas aeruginosa strain AU17965 NODE_15_length_143573_cov_5.91299_ID_29, whole genome shotgun sequence

⇒Summary: seq-len = 143573 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 142489-143237 bp Zoom in on locus 1 x13 CRISPR array Location: 142489-143237 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 142489-143237 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 142489-143237 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)