CRISPRone

CRISPRone report for GCA_001560865.1_ASM156086v1

♦ Seq 1: LODH01000042.1 Pseudomonas aeruginosa strain 105777 LT17_contig000042, whole genome shotgun sequence

⇒Summary: seq-len = 83687 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 15245-22033 bp Zoom in on locus 1 Gene: cd09696:cas3 Type: Subtype-I-U Location: 15245-18466 bp Gene: pfam13280:WYL Type: other Location: 18479-19387 bp Gene: unk Type: unknown Location: 19667-20557 bp Gene: unk Type: unknown Location: 20692-21009 bp Gene: mkCas0115:csx3 Type: other Location: 21002-22033 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LODH01000025.1 Pseudomonas aeruginosa strain 105777 LT17_contig000025, whole genome shotgun sequence

⇒Summary: seq-len = 480310 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 436487-436755 bp Zoom in on locus 1 x5 CRISPR array Location: 436487-436755 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 436487-436755 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 436487-436755 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: LODH01000011.1 Pseudomonas aeruginosa strain 105777 LT17_contig000011, whole genome shotgun sequence

⇒Summary: seq-len = 186092 bp; # of CRISPR array = 0; # of cas gene = 4  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 139965-148226 bp Zoom in on locus 1 Gene: mkCas0115:csx3 Type: other Location: 139965-141575 bp Gene: pfam13280:WYL Type: other Location: 141736-142752 bp Gene: COG2378:WYL Type: other Location: 143494-144336 bp Gene: unk Type: unknown Location: 144467-144754 bp Gene: unk Type: unknown Location: 144889-145467 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 145860-148226 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)