CRISPRone

CRISPRone report for GCA_001577795.1_ASM157779v1

♦ Seq 1: CP010888.1 Clostridioides difficile strain 08ACD0030 chromosome, complete genome

⇒Summary: seq-len = 4167076 bp; # of CRISPR array = 12; # of cas gene = 15  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1661474-1666032 bp 2 Locus 2: 1823853-1824607 bp 3 Locus 3: 2036281-2036840 bp 4 Locus 4: 2176153-2176910 bp 5 Locus 5: 2353654-2354738 bp 6 Locus 6: 2692827-2692987 bp 7 Locus 7: 3074127-3074743 bp 8 Locus 8: 3238011-3246332 bp 9 Locus 9: 3319613-3319970 bp 10 Locus 10: 3822235-3833372 bp 11 Locus 11: 4055637-4055730 bp Zoom in on locus 1 x5 x4 x8 Zoom in on locus 2 x12 Zoom in on locus 3 x9 Zoom in on locus 4 x12 Zoom in on locus 5 x17 Zoom in on locus 6 x3 Zoom in on locus 7 x10 Zoom in on locus 8 Zoom in on locus 9 x6 Zoom in on locus 10 x25 Zoom in on locus 11 x2 CRISPR array Location: 1661474-1661766 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 1661474-1661766 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 1663449-1663675 bp Num of repeats: 4 Spacers: s5-s7 CRISPR array Location: 1663449-1663675 bp Num of repeats: 4 Spacers: s5-s7 CRISPR array Location: 1665537-1666032 bp Num of repeats: 8 Spacers: s8-s14 CRISPR array Location: 1665537-1666032 bp Num of repeats: 8 Spacers: s8-s14 CRISPR array Location: 1823853-1824607 bp Num of repeats: 12 Spacers: s15-s25 CRISPR array Location: 1823853-1824607 bp Num of repeats: 12 Spacers: s15-s25 CRISPR array Location: 2036281-2036840 bp Num of repeats: 9 Spacers: s26-s33 CRISPR array Location: 2036281-2036840 bp Num of repeats: 9 Spacers: s26-s33 CRISPR array Location: 2176153-2176910 bp Num of repeats: 12 Spacers: s34-s44 CRISPR array Location: 2176153-2176910 bp Num of repeats: 12 Spacers: s34-s44 CRISPR array Location: 2353654-2354738 bp Num of repeats: 17 Spacers: s45-s60 CRISPR array Location: 2353654-2354738 bp Num of repeats: 17 Spacers: s45-s60 CRISPR array Location: 2692827-2692987 bp Num of repeats: 3 Spacers: s61-s62 CRISPR array Location: 2692827-2692987 bp Num of repeats: 3 Spacers: s61-s62 CRISPR array Location: 3074127-3074743 bp Num of repeats: 10 Spacers: s63-s71 CRISPR array Location: 3074127-3074743 bp Num of repeats: 10 Spacers: s63-s71 Gene: cd09641:cas3HD Type: Type-I Location: 3238011-3240419 bp Gene: cd09693:cas5 Type: Type-I Location: 3240446-3241243 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3241259-3242275 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 3242295-3243770 bp Gene: pfam01881:cas6 Type: other Location: 3243775-3244512 bp Gene: unk Type: unknown Location: 3244613-3244789 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 3245223-3246332 bp CRISPR array Location: 3319613-3319970 bp Num of repeats: 6 Spacers: s72-s76 CRISPR array Location: 3319613-3319970 bp Num of repeats: 6 Spacers: s72-s76 CRISPR array Location: 3822235-3823834 bp Num of repeats: 25 Spacers: s77-s100 CRISPR array Location: 3822235-3823834 bp Num of repeats: 25 Spacers: s77-s100 Gene: cd09725:cas2 Type: universal Location: 3824018-3824284 bp Gene: cd09722:cas1 Type: universal Location: 3824287-3825267 bp Gene: pfam01930:cas4 Type: Type-I Location: 3825270-3825788 bp Gene: COG1203:cas3 Type: Type-I Location: 3825836-3828157 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 3828168-3828869 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3828871-3829785 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3829787-3831637 bp Gene: pfam01881:cas6 Type: other Location: 3831643-3832437 bp Gene: pfam13280:WYL Type: other Location: 3832458-3833372 bp CRISPR array Location: 4055637-4055730 bp Num of repeats: 2 Spacers: s101-s101 CRISPR array Location: 4055637-4055730 bp Num of repeats: 2 Spacers: s101-s101 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1661474-1661766 bp]: array | spacers
           [Locus range 1663449-1663675 bp]: array | spacers
           [Locus range 1665537-1666032 bp]: array | spacers
           [Locus range 1823853-1824607 bp]: array | spacers
           [Locus range 2036281-2036840 bp]: array | spacers
           [Locus range 2176153-2176910 bp]: array | spacers
           [Locus range 2353654-2354738 bp]: array | spacers
           [Locus range 2692827-2692987 bp]: array | spacers
           [Locus range 3074127-3074743 bp]: array | spacers
           [Locus range 3319613-3319970 bp]: array | spacers
           [Locus range 3822235-3823834 bp]: array | spacers
           [Locus range 4055637-4055730 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)