CRISPRone

CRISPRone report for GCA_001580105.1_ASM158010v1

♦ Seq 1: KQ970995.1 Bacteroides fragilis strain KLE1257 genomic scaffold Scaffold235, whole genome shotgun sequence

⇒Summary: seq-len = 448317 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 129168-132781 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 129168-129836 bp Gene: unk Type: unknown Location: 129839-130612 bp Gene: unk Type: unknown Location: 130620-131885 bp Gene: pfam13280:WYL Type: other Location: 131882-132781 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: KQ971004.1 Bacteroides fragilis strain KLE1257 genomic scaffold Scaffold385, whole genome shotgun sequence

⇒Summary: seq-len = 153915 bp; # of CRISPR array = 0; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 792-8374 bp Zoom in on locus 1 antiRepeat Location: 792-838 bp Strand: - Match length: 36 bp Mismatch: 11 bp antiRepeat Location: 1434-1480 bp Strand: - Match length: 35 bp Mismatch: 12 bp Gene: pfam09827:cas2 Type: Subtype-II-C Location: 1648-1980 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 1984-2916 bp Gene: unk Type: unknown Location: 3036-3344 bp Gene: unk Type: unknown Location: 3411-3935 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 3951-8261 bp antiRepeat Location: 8329-8374 bp Strand: - Match length: 26 bp Mismatch: 21 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: KQ970994.1 Bacteroides fragilis strain KLE1257 genomic scaffold Scaffold228, whole genome shotgun sequence

⇒Summary: seq-len = 397673 bp; # of CRISPR array = 2; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 193332-195779 bp Zoom in on locus 1 x4 x5 CRISPR array Location: 193332-193554 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 193332-193554 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 193720-194005 bp Num of repeats: 5 Spacers: s4-s7 CRISPR array Location: 193720-194005 bp Num of repeats: 5 Spacers: s4-s7 Gene: cd09725:cas2 Type: universal Location: 194218-194481 bp Gene: cd09722:cas1 Type: universal Location: 194484-194723 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 194716-195096 bp Gene: cd09652:cas6 Type: other Location: 195108-195779 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 193332-193554 bp]: array | spacers
           [Locus range 193720-194005 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)