CRISPRone

CRISPRone report for GCA_001594325.2_ASM159432v2

♦ Seq 1: CP008858.2 Pseudomonas aeruginosa strain F63912, complete genome

⇒Summary: seq-len = 6618768 bp; # of CRISPR array = 2; # of cas gene = 11  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1104849-1115434 bp 2 Locus 2: 4349943-4361977 bp Zoom in on locus 1 Zoom in on locus 2 x26 x21 Gene: COG0640:csa3 Type: Subtype-I-A Location: 1104849-1105718 bp Gene: pfam00078:RT Type: other Location: 1110627-1111895 bp Gene: unk Type: unknown Location: 1112045-1112443 bp Gene: unk Type: unknown Location: 1112627-1112806 bp Gene: cls000170:cas4 Type: Type-I Location: 1113890-1115434 bp CRISPR array Location: 4349943-4351496 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 4349943-4351496 bp Num of repeats: 26 Spacers: s1-s25 Gene: pfam09707:cas2 Type: universal Location: 4351561-4351860 bp Gene: cd09719:cas1 Type: universal Location: 4351857-4352747 bp Gene: pfam08798:cas6e Type: other Location: 4352774-4353313 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 4353360-4354022 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 4354024-4355166 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 4355176-4355706 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 4355703-4357271 bp Gene: cd09641:cas3HD Type: Type-I Location: 4357274-4359955 bp CRISPR array Location: 4360728-4361977 bp Num of repeats: 21 Spacers: s26-s45 CRISPR array Location: 4360728-4361977 bp Num of repeats: 21 Spacers: s26-s45 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 4349943-4351496 bp]: array | spacers
           [Locus range 4360728-4361977 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)