CRISPRone

CRISPRone report for GCA_001601595.1_ASM160159v1

♦ Seq 1: LOHK01000088.1 Pseudomonas aeruginosa strain 105738 LT20_contig000088, whole genome shotgun sequence

⇒Summary: seq-len = 11044 bp; # of CRISPR array = 1; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 338-9968 bp Zoom in on locus 1 x21 Gene: cd09739:cas6f Type: other Location: 338-901 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 905-1933 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 1944-2927 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 2914-4218 bp Gene: COG1203:cas3 Type: Type-I Location: 4276-7506 bp Gene: cd09718:cas1 Type: universal Location: 7503-8477 bp CRISPR array Location: 8738-9968 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 8738-9968 bp Num of repeats: 21 Spacers: s1-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 8738-9968 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LOHK01000017.1 Pseudomonas aeruginosa strain 105738 LT20_contig000017, whole genome shotgun sequence

⇒Summary: seq-len = 140384 bp; # of CRISPR array = 0; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 98767-100974 bp Zoom in on locus 1 Gene: cd09693:cas5 Type: Type-I Location: 98767-99174 bp Gene: unk Type: unknown Location: 99208-99894 bp Gene: COG2378:WYL Type: other Location: 100003-100974 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: LOHK01000055.1 Pseudomonas aeruginosa strain 105738 LT20_contig000055, whole genome shotgun sequence

⇒Summary: seq-len = 70322 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 34-181 bp Zoom in on locus 1 x3 CRISPR array Location: 34-181 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 34-181 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 34-181 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)