CRISPRone

CRISPRone report for GCA_001601745.1_ASM160174v1

♦ Seq 1: LOHH01000005.1 Pseudomonas aeruginosa strain 105819 LT18_contig000005, whole genome shotgun sequence

⇒Summary: seq-len = 600280 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 488434-489602 bp Zoom in on locus 1 x20 CRISPR array Location: 488434-489602 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 488434-489602 bp Num of repeats: 20 Spacers: s1-s19 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 488434-489602 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LOHH01000012.1 Pseudomonas aeruginosa strain 105819 LT18_contig000012, whole genome shotgun sequence

⇒Summary: seq-len = 466403 bp; # of CRISPR array = 0; # of cas gene = 3  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 81328-87289 bp Zoom in on locus 1 Gene: pfam00078:RT Type: other Location: 81328-83013 bp Gene: unk Type: unknown Location: 83566-83748 bp Gene: unk Type: unknown Location: 83904-84821 bp Gene: cd06127:DEDDh Type: Type-I Location: 84869-85324 bp Gene: unk Type: unknown Location: 85576-85791 bp Gene: unk Type: unknown Location: 85928-86335 bp Gene: cls001593:casR Type: Type-I Location: 86360-87289 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: LOHH01000029.1 Pseudomonas aeruginosa strain 105819 LT18_contig000029, whole genome shotgun sequence

⇒Summary: seq-len = 56514 bp; # of CRISPR array = 0; # of cas gene = 4  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4283-14144 bp Zoom in on locus 1 Gene: mkCas0115:csx3 Type: other Location: 4283-5893 bp Gene: pfam13280:WYL Type: other Location: 6054-7070 bp Gene: unk Type: unknown Location: 8034-8273 bp Gene: unk Type: unknown Location: 8342-8521 bp Gene: unk Type: unknown Location: 8831-9364 bp Gene: pfam13280:WYL Type: other Location: 9379-10254 bp Gene: unk Type: unknown Location: 10304-10672 bp Gene: unk Type: unknown Location: 10738-11385 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 11778-14144 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: LOHH01000035.1 Pseudomonas aeruginosa strain 105819 LT18_contig000035, whole genome shotgun sequence

⇒Summary: seq-len = 130741 bp; # of CRISPR array = 0; # of cas gene = 5  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 59230-64702 bp Zoom in on locus 1 Gene: cd09707:csf3gr5 Type: Subtype-IV-A Location: 59230-59880 bp Gene: cd09706:csf2gr7 Type: Subtype-IV-A Location: 59887-60930 bp Gene: cd09705:csf1gr8 Type: Subtype-IV-A Location: 60930-61685 bp Gene: mkCas0159:csf5gr6 Type: Subtype-IV-A Location: 61714-62439 bp Gene: cd09708:DinG Type: Subtype-IV-A Location: 62528-64702 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)