CRISPRone

CRISPRone report for GCA_001678145.1_ASM167814v1

♦ Seq 1: LYDP01000044.1 Clostridioides difficile strain CD8-15 NODE_9, whole genome shotgun sequence

⇒Summary: seq-len = 170014 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 57228-58644 bp Zoom in on locus 1 x22 CRISPR array Location: 57228-58644 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 57228-58644 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 57228-58644 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LYDP01000038.1 Clostridioides difficile strain CD8-15 NODE_6, whole genome shotgun sequence

⇒Summary: seq-len = 226859 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7189-12991 bp 2 Locus 2: 36902-37194 bp Zoom in on locus 1 x2 x5 x6 Zoom in on locus 2 x5 CRISPR array Location: 7189-7283 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 7189-7283 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 9695-9987 bp Num of repeats: 5 Spacers: s2-s5 CRISPR array Location: 9695-9987 bp Num of repeats: 5 Spacers: s2-s5 CRISPR array Location: 12631-12991 bp Num of repeats: 6 Spacers: s6-s10 CRISPR array Location: 12631-12991 bp Num of repeats: 6 Spacers: s6-s10 CRISPR array Location: 36902-37194 bp Num of repeats: 5 Spacers: s11-s14 CRISPR array Location: 36902-37194 bp Num of repeats: 5 Spacers: s11-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7189-7283 bp]: array | spacers
           [Locus range 9695-9987 bp]: array | spacers
           [Locus range 12631-12991 bp]: array | spacers
           [Locus range 36902-37194 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: LYDP01000017.1 Clostridioides difficile strain CD8-15 NODE_1, whole genome shotgun sequence

⇒Summary: seq-len = 831956 bp; # of CRISPR array = 2; # of cas gene = 7  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 276344-276904 bp 2 Locus 2: 352061-361793 bp 3 Locus 3: 527135-527619 bp Zoom in on locus 1 x9 Zoom in on locus 2 Zoom in on locus 3 x8 CRISPR array Location: 276344-276904 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 276344-276904 bp Num of repeats: 9 Spacers: s1-s8 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 352061-353170 bp Gene: cas14:cas14 Type: Type-V Location: 353323-354495 bp Gene: unk Type: unknown Location: 354523-354981 bp Gene: pfam01881:cas6 Type: other Location: 355295-356032 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 356037-357512 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 357532-358545 bp Gene: cd09693:cas5 Type: Type-I Location: 358561-359358 bp Gene: cd09641:cas3HD Type: Type-I Location: 359385-361793 bp CRISPR array Location: 527135-527619 bp Num of repeats: 8 Spacers: s9-s15 CRISPR array Location: 527135-527619 bp Num of repeats: 8 Spacers: s9-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 276344-276904 bp]: array | spacers
           [Locus range 527135-527619 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: LYDP01000016.1 Clostridioides difficile strain CD8-15 NODE_19, whole genome shotgun sequence

⇒Summary: seq-len = 52848 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5313-5540 bp Zoom in on locus 1 x4 CRISPR array Location: 5313-5540 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 5313-5540 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5313-5540 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: LYDP01000041.1 Clostridioides difficile strain CD8-15 NODE_8, whole genome shotgun sequence

⇒Summary: seq-len = 207750 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 115789-116212 bp Zoom in on locus 1 x7 CRISPR array Location: 115789-116212 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 115789-116212 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 115789-116212 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: LYDP01000027.1 Clostridioides difficile strain CD8-15 NODE_2, whole genome shotgun sequence

⇒Summary: seq-len = 662584 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 398357-409572 bp Zoom in on locus 1 x26 Gene: pfam13280:WYL Type: other Location: 398357-399271 bp Gene: pfam01881:cas6 Type: other Location: 399349-400086 bp Gene: unk Type: unknown Location: 400092-400598 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 400656-401942 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 401944-402858 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 402860-403561 bp Gene: cd09641:cas3HD Type: Type-I Location: 403572-405893 bp Gene: pfam01930:cas4 Type: Type-I Location: 405908-406459 bp Gene: cd09722:cas1 Type: universal Location: 406462-407442 bp Gene: cd09725:cas2 Type: universal Location: 407445-407711 bp CRISPR array Location: 407895-409572 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 407895-409572 bp Num of repeats: 26 Spacers: s1-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 407895-409572 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: LYDP01000019.1 Clostridioides difficile strain CD8-15 NODE_21, whole genome shotgun sequence

⇒Summary: seq-len = 36570 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17549-18102 bp Zoom in on locus 1 x9 CRISPR array Location: 17549-18102 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 17549-18102 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17549-18102 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)