CRISPRone

CRISPRone report for GCA_001679685.1_ASM167968v1

♦ Seq 1: CP016214.1 Pseudomonas aeruginosa strain PA121617 chromosome, complete genome

⇒Summary: seq-len = 6430493 bp; # of CRISPR array = 4; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4744466-4745394 bp 2 Locus 2: 6110306-6122575 bp Zoom in on locus 1 x16 Zoom in on locus 2 x14 x4 x18 CRISPR array Location: 4744466-4745394 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 4744466-4745394 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 6110306-6111115 bp Num of repeats: 14 Spacers: s16-s28 CRISPR array Location: 6110306-6111115 bp Num of repeats: 14 Spacers: s16-s28 CRISPR array Location: 6112387-6112595 bp Num of repeats: 4 Spacers: s29-s31 CRISPR array Location: 6112387-6112595 bp Num of repeats: 4 Spacers: s29-s31 Gene: cd09739:cas6f Type: other Location: 6112778-6113341 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 6113345-6114373 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6114384-6115367 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6115354-6116655 bp Gene: COG1203:cas3 Type: Type-I Location: 6117066-6120296 bp Gene: cd09718:cas1 Type: universal Location: 6120293-6121267 bp CRISPR array Location: 6121528-6122575 bp Num of repeats: 18 Spacers: s32-s48 CRISPR array Location: 6121528-6122575 bp Num of repeats: 18 Spacers: s32-s48 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 4744466-4745394 bp]: array | spacers
           [Locus range 6110306-6111115 bp]: array | spacers
           [Locus range 6112387-6112595 bp]: array | spacers
           [Locus range 6121528-6122575 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)