CRISPRone

CRISPRone report for GCA_001699875.1_ASM169987v1

♦ Seq 1: LIDU01000047.1 Bacteroides fragilis strain 20656-2-1 contig00046, whole genome shotgun sequence

⇒Summary: seq-len = 204020 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 108433-112046 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 108433-109101 bp Gene: unk Type: unknown Location: 109104-109877 bp Gene: unk Type: unknown Location: 109885-111150 bp Gene: pfam13280:WYL Type: other Location: 111147-112046 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LIDU01000056.1 Bacteroides fragilis strain 20656-2-1 contig00055, whole genome shotgun sequence

⇒Summary: seq-len = 159035 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 508-8537 bp Zoom in on locus 1 x16 CRISPR array Location: 508-1703 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 508-1703 bp Num of repeats: 16 Spacers: s1-s15 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 1812-2144 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 2148-3080 bp Gene: unk Type: unknown Location: 3200-3508 bp Gene: unk Type: unknown Location: 3706-4098 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 4114-8424 bp antiRepeat Location: 8492-8537 bp Strand: - Match length: 26 bp Mismatch: 21 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 508-1703 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)