CRISPRone

CRISPRone report for GCA_001704755.2_ASM170475v2

♦ Seq 1: MBMH02000006.1 Clostridioides difficile strain WCHCD070106 NODE_6_length_25958_cov_86.097645, whole genome shotgun sequence

⇒Summary: seq-len = 25958 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2128-4903 bp Zoom in on locus 1 x12 x3 CRISPR array Location: 2128-2881 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 2128-2881 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 4744-4903 bp Num of repeats: 3 Spacers: s12-s13 CRISPR array Location: 4744-4903 bp Num of repeats: 3 Spacers: s12-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2128-2881 bp]: array | spacers
           [Locus range 4744-4903 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MBMH02000103.1 Clostridioides difficile strain WCHCD070106 NODE_103_length_9209_cov_80.191767, whole genome shotgun sequence

⇒Summary: seq-len = 9209 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5576-5867 bp Zoom in on locus 1 x5 CRISPR array Location: 5576-5867 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 5576-5867 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5576-5867 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MBMH02000035.1 Clostridioides difficile strain WCHCD070106 NODE_35_length_15324_cov_69.589688, whole genome shotgun sequence

⇒Summary: seq-len = 15324 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12891-13843 bp Zoom in on locus 1 x15 CRISPR array Location: 12891-13843 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 12891-13843 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 12891-13843 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: MBMH02000837.1 Clostridioides difficile strain WCHCD070106 NODE_838_length_696_cov_10.968174, whole genome shotgun sequence

⇒Summary: seq-len = 696 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 428-587 bp Zoom in on locus 1 x3 CRISPR array Location: 428-587 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 428-587 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 428-587 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: MBMH02000044.1 Clostridioides difficile strain WCHCD070106 NODE_44_length_13709_cov_32.313887, whole genome shotgun sequence

⇒Summary: seq-len = 13709 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1903-13612 bp Zoom in on locus 1 x33 CRISPR array Location: 1903-4035 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 1903-4035 bp Num of repeats: 33 Spacers: s1-s32 Gene: cd09725:cas2 Type: universal Location: 4219-4485 bp Gene: cd09722:cas1 Type: universal Location: 4488-5468 bp Gene: pfam01930:cas4 Type: Type-I Location: 5471-5989 bp Gene: COG1203:cas3 Type: Type-I Location: 6037-8358 bp Gene: cd09693:cas5 Type: Type-I Location: 8369-9070 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 9072-9986 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 9988-11838 bp Gene: pfam01881:cas6 Type: other Location: 11844-12638 bp Gene: pfam13280:WYL Type: other Location: 12659-13612 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1903-4035 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: MBMH02000394.1 Clostridioides difficile strain WCHCD070106 NODE_395_length_3356_cov_26.245932, whole genome shotgun sequence

⇒Summary: seq-len = 3356 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2282-3302 bp Zoom in on locus 1 x16 CRISPR array Location: 2282-3302 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 2282-3302 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2282-3302 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: MBMH02000183.1 Clostridioides difficile strain WCHCD070106 NODE_183_length_6459_cov_32.469182, whole genome shotgun sequence

⇒Summary: seq-len = 6459 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 294-6458 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 294-2702 bp Gene: cd09693:cas5 Type: Type-I Location: 2729-3526 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3542-4558 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 4577-6052 bp Gene: pfam01881:cas6 Type: other Location: 6057-6458 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: MBMH02000414.1 Clostridioides difficile strain WCHCD070106 NODE_415_length_3229_cov_18.473163, whole genome shotgun sequence

⇒Summary: seq-len = 3229 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1556-1783 bp Zoom in on locus 1 x4 CRISPR array Location: 1556-1783 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 1556-1783 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1556-1783 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: MBMH02000330.1 Clostridioides difficile strain WCHCD070106 NODE_330_length_4005_cov_40.563492, whole genome shotgun sequence

⇒Summary: seq-len = 4005 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3129-3554 bp Zoom in on locus 1 x7 CRISPR array Location: 3129-3554 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 3129-3554 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3129-3554 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: MBMH02000132.1 Clostridioides difficile strain WCHCD070106 NODE_132_length_8194_cov_54.195800, whole genome shotgun sequence

⇒Summary: seq-len = 8194 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6164-6677 bp Zoom in on locus 1 x5 x3 CRISPR array Location: 6164-6455 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 6164-6455 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 6516-6677 bp Num of repeats: 3 Spacers: s5-s6 CRISPR array Location: 6516-6677 bp Num of repeats: 3 Spacers: s5-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6164-6455 bp]: array | spacers
           [Locus range 6516-6677 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)