CRISPRone

CRISPRone report for GCA_001721785.1_ASM172178v1

♦ Seq 1: CP012580.1 Pseudomonas aeruginosa strain PA_D9, complete genome

⇒Summary: seq-len = 6645477 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3517540-3528389 bp 2 Locus 2: 6155759-6166999 bp Zoom in on locus 1 x29 x10 Zoom in on locus 2 CRISPR array Location: 3517540-3519248 bp Num of repeats: 29 Spacers: s1-s28 CRISPR array Location: 3517540-3519248 bp Num of repeats: 29 Spacers: s1-s28 Gene: cd09739:cas6f Type: other Location: 3519431-3519994 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 3519998-3521026 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 3521037-3522020 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 3522007-3523311 bp Gene: COG1203:cas3 Type: Type-I Location: 3523369-3526599 bp Gene: cd09718:cas1 Type: universal Location: 3526596-3527570 bp CRISPR array Location: 3527822-3528389 bp Num of repeats: 10 Spacers: s29-s37 CRISPR array Location: 3527822-3528389 bp Num of repeats: 10 Spacers: s29-s37 Gene: cd09710:cas3 Type: Subtype-I-D Location: 6155759-6158566 bp Gene: unk Type: unknown Location: 6158569-6161154 bp Gene: unk Type: unknown Location: 6161855-6165595 bp Gene: mkCas0115:csx3 Type: other Location: 6165619-6166080 bp Gene: pfam13280:WYL Type: other Location: 6166085-6166999 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 3517540-3519248 bp]: array | spacers
           [Locus range 3527822-3528389 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)