CRISPRone

CRISPRone report for GCA_001721805.1_ASM172180v1

♦ Seq 1: CP012581.1 Pseudomonas aeruginosa strain PA_D16, complete genome

⇒Summary: seq-len = 6681975 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2933845-2944694 bp 2 Locus 2: 6192257-6203497 bp Zoom in on locus 1 x29 x10 Zoom in on locus 2 CRISPR array Location: 2933845-2935553 bp Num of repeats: 29 Spacers: s1-s28 CRISPR array Location: 2933845-2935553 bp Num of repeats: 29 Spacers: s1-s28 Gene: cd09739:cas6f Type: other Location: 2935736-2936299 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 2936303-2937331 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 2937342-2938325 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 2938312-2939616 bp Gene: COG1203:cas3 Type: Type-I Location: 2939674-2942904 bp Gene: cd09718:cas1 Type: universal Location: 2942901-2943875 bp CRISPR array Location: 2944127-2944694 bp Num of repeats: 10 Spacers: s29-s37 CRISPR array Location: 2944127-2944694 bp Num of repeats: 10 Spacers: s29-s37 Gene: cd09710:cas3 Type: Subtype-I-D Location: 6192257-6195064 bp Gene: unk Type: unknown Location: 6195067-6197652 bp Gene: unk Type: unknown Location: 6198353-6202093 bp Gene: mkCas0115:csx3 Type: other Location: 6202117-6202578 bp Gene: pfam13280:WYL Type: other Location: 6202583-6203497 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 2933845-2935553 bp]: array | spacers
           [Locus range 2944127-2944694 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)