CRISPRone

CRISPRone report for GCA_001750435.1_ASM175043v1

♦ Seq 1: MKEN01000383.1 Pseudomonas aeruginosa strain PA09ZY10 Scaffold14_43, whole genome shotgun sequence

⇒Summary: seq-len = 7818 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-6626 bp Zoom in on locus 1 x13 Gene: cd09673:cas3f Type: Subtype-I-F Location: 3-1772 bp Gene: unk Type: unknown Location: 1866-2123 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 2122-3129 bp Gene: pfam09614:cas5f Type: Subtype-I-F Location: 3116-4099 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 4110-5138 bp Gene: cd09739:cas6f Type: other Location: 5142-5705 bp CRISPR array Location: 5879-6626 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 5879-6626 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 5879-6626 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MKEN01001762.1 Pseudomonas aeruginosa strain PA09ZY10 Scaffold45_1, whole genome shotgun sequence

⇒Summary: seq-len = 3173 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2026-2774 bp Zoom in on locus 1 x13 CRISPR array Location: 2026-2774 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 2026-2774 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2026-2774 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MKEN01000651.1 Pseudomonas aeruginosa strain PA09ZY10 Scaffold19_32, whole genome shotgun sequence

⇒Summary: seq-len = 9904 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5976-6304 bp Zoom in on locus 1 x6 CRISPR array Location: 5976-6304 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 5976-6304 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5976-6304 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: MKEN01000381.1 Pseudomonas aeruginosa strain PA09ZY10 Scaffold14_41, whole genome shotgun sequence

⇒Summary: seq-len = 3914 bp; # of CRISPR array = 1; # of cas gene = 1  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1730-3912 bp Zoom in on locus 1 x12 CRISPR array Location: 1730-2418 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 1730-2418 bp Num of repeats: 12 Spacers: s1-s11 Gene: COG1518:cas1 Type: universal Location: 2698-3912 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1730-2418 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)