CRISPRone

CRISPRone report for GCA_001756355.1_ASM175635v1

♦ Seq 1: LZQE01000012.1 Pseudomonas aeruginosa strain Lo049 scaffold2.1, whole genome shotgun sequence

⇒Summary: seq-len = 621500 bp; # of CRISPR array = 0; # of cas gene = 3  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 116703-126158 bp Zoom in on locus 1 Gene: COG1199:DinG Type: Subtype-IV-A Location: 116703-119069 bp Gene: unk Type: unknown Location: 119462-120109 bp Gene: unk Type: unknown Location: 120133-121713 bp Gene: pfam13280:WYL Type: other Location: 121843-122718 bp Gene: unk Type: unknown Location: 122732-123313 bp Gene: unk Type: unknown Location: 123719-124000 bp Gene: pfam13280:WYL Type: other Location: 125082-126158 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LZQE01000016.1 Pseudomonas aeruginosa strain Lo049 scaffold23.1, whole genome shotgun sequence

⇒Summary: seq-len = 67189 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 36949-47748 bp Zoom in on locus 1 x12 x26 CRISPR array Location: 36949-37637 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 36949-37637 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09739:cas6f Type: other Location: 37820-38383 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 38387-39415 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 39426-40409 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 40396-41700 bp Gene: COG1203:cas3 Type: Type-I Location: 41758-44988 bp Gene: cd09718:cas1 Type: universal Location: 44985-45959 bp CRISPR array Location: 46221-47748 bp Num of repeats: 26 Spacers: s12-s36 CRISPR array Location: 46221-47748 bp Num of repeats: 26 Spacers: s12-s36 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 36949-37637 bp]: array | spacers
           [Locus range 46221-47748 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)