CRISPRone

CRISPRone report for GCA_001757605.1_ASM175760v1

♦ Seq 1: JFOF01000038.1 Clostridioides difficile strain 7.10492 contig_38, whole genome shotgun sequence

⇒Summary: seq-len = 12724 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3840-7238 bp Zoom in on locus 1 x5 x9 x5 CRISPR array Location: 3840-4136 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 3840-4136 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 4738-5295 bp Num of repeats: 9 Spacers: s5-s12 CRISPR array Location: 4738-5295 bp Num of repeats: 9 Spacers: s5-s12 CRISPR array Location: 6948-7238 bp Num of repeats: 5 Spacers: s13-s16 CRISPR array Location: 6948-7238 bp Num of repeats: 5 Spacers: s13-s16 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3840-4136 bp]: array | spacers
           [Locus range 4738-5295 bp]: array | spacers
           [Locus range 6948-7238 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JFOF01000027.1 Clostridioides difficile strain 7.10492 contig_27, whole genome shotgun sequence

⇒Summary: seq-len = 80445 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28445-29131 bp Zoom in on locus 1 x11 CRISPR array Location: 28445-29131 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 28445-29131 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 28445-29131 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JFOF01000024.1 Clostridioides difficile strain 7.10492 contig_24, whole genome shotgun sequence

⇒Summary: seq-len = 404355 bp; # of CRISPR array = 2; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 129790-130349 bp 2 Locus 2: 248675-249100 bp 3 Locus 3: 328910-338632 bp 4 Locus 4: 389841-400799 bp Zoom in on locus 1 x9 Zoom in on locus 2 x7 Zoom in on locus 3 Zoom in on locus 4 CRISPR array Location: 129790-130349 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 129790-130349 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 248675-249100 bp Num of repeats: 7 Spacers: s9-s14 CRISPR array Location: 248675-249100 bp Num of repeats: 7 Spacers: s9-s14 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 328910-330019 bp Gene: cas14:cas14 Type: Type-V Location: 330172-331344 bp Gene: unk Type: unknown Location: 331372-331830 bp Gene: pfam01881:cas6 Type: other Location: 332144-332881 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 332886-334352 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 334371-335384 bp Gene: cd09693:cas5 Type: Type-I Location: 335400-336197 bp Gene: cd09641:cas3HD Type: Type-I Location: 336224-338632 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 389841-390326 bp Gene: cd06127:DEDDh Type: Type-I Location: 397147-398175 bp Gene: unk Type: unknown Location: 398547-399053 bp Gene: unk Type: unknown Location: 399466-400134 bp Gene: cd06127:DEDDh Type: Type-I Location: 400293-400799 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 129790-130349 bp]: array | spacers
           [Locus range 248675-249100 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JFOF01000016.1 Clostridioides difficile strain 7.10492 contig_16, whole genome shotgun sequence

⇒Summary: seq-len = 115461 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29132-29425 bp Zoom in on locus 1 x5 CRISPR array Location: 29132-29425 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 29132-29425 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 29132-29425 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: JFOF01000014.1 Clostridioides difficile strain 7.10492 contig_14, whole genome shotgun sequence

⇒Summary: seq-len = 22936 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 22559-22915 bp Zoom in on locus 1 x6 CRISPR array Location: 22559-22915 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 22559-22915 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 22559-22915 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: JFOF01000047.1 Clostridioides difficile strain 7.10492 contig_47, whole genome shotgun sequence

⇒Summary: seq-len = 57174 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 56927-57152 bp Zoom in on locus 1 x4 CRISPR array Location: 56927-57152 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 56927-57152 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 56927-57152 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)