CRISPRone

CRISPRone report for GCA_001809935.1_ASM180993v1

♦ Seq 1: KV799421.1 Pseudomonas sp. HMSC058A10 genomic scaffold Scaffold188, whole genome shotgun sequence

⇒Summary: seq-len = 48125 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37471-48086 bp Zoom in on locus 1 x21 x14 CRISPR array Location: 37471-38698 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 37471-38698 bp Num of repeats: 21 Spacers: s1-s20 Gene: cd09739:cas6f Type: other Location: 38881-39444 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39448-40476 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40487-41470 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41457-42761 bp Gene: COG1203:cas3 Type: Type-I Location: 42819-46049 bp Gene: cd09718:cas1 Type: universal Location: 46046-47020 bp CRISPR array Location: 47278-48086 bp Num of repeats: 14 Spacers: s21-s33 CRISPR array Location: 47278-48086 bp Num of repeats: 14 Spacers: s21-s33 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37471-38698 bp]: array | spacers
           [Locus range 47278-48086 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: KV799367.1 Pseudomonas sp. HMSC058A10 genomic scaffold Scaffold3, whole genome shotgun sequence

⇒Summary: seq-len = 1530 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 564-1491 bp Zoom in on locus 1 x16 CRISPR array Location: 564-1491 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 564-1491 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 564-1491 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)