CRISPRone

CRISPRone report for GCA_001810325.1_ASM181032v1

♦ Seq 1: KV800855.1 Pseudomonas sp. HMSC064G05 genomic scaffold Scaffold816, whole genome shotgun sequence

⇒Summary: seq-len = 49045 bp; # of CRISPR array = 7; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37430-48800 bp Zoom in on locus 1 x5 x4 x2 x7 x4 x7 x7 CRISPR array Location: 37430-37698 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 37430-37698 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 37799-38007 bp Num of repeats: 4 Spacers: s5-s7 CRISPR array Location: 37799-38007 bp Num of repeats: 4 Spacers: s5-s7 CRISPR array Location: 38105-38193 bp Num of repeats: 2 Spacers: s8-s8 CRISPR array Location: 38105-38193 bp Num of repeats: 2 Spacers: s8-s8 Gene: cd09739:cas6f Type: other Location: 38377-38940 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 38944-39972 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 39983-40966 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 40953-42254 bp Gene: COG1203:cas3 Type: Type-I Location: 42665-45895 bp Gene: cd09718:cas1 Type: universal Location: 45892-46866 bp CRISPR array Location: 47127-47515 bp Num of repeats: 7 Spacers: s9-s14 CRISPR array Location: 47127-47515 bp Num of repeats: 7 Spacers: s9-s14 CRISPR array Location: 47620-47827 bp Num of repeats: 4 Spacers: s15-s17 CRISPR array Location: 47620-47827 bp Num of repeats: 4 Spacers: s15-s17 CRISPR array Location: 47926-48314 bp Num of repeats: 7 Spacers: s18-s23 CRISPR array Location: 47926-48314 bp Num of repeats: 7 Spacers: s18-s23 CRISPR array Location: 48413-48800 bp Num of repeats: 7 Spacers: s24-s29 CRISPR array Location: 48413-48800 bp Num of repeats: 7 Spacers: s24-s29 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37430-37698 bp]: array | spacers
           [Locus range 37799-38007 bp]: array | spacers
           [Locus range 38105-38193 bp]: array | spacers
           [Locus range 47127-47515 bp]: array | spacers
           [Locus range 47620-47827 bp]: array | spacers
           [Locus range 47926-48314 bp]: array | spacers
           [Locus range 48413-48800 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: KV800863.1 Pseudomonas sp. HMSC064G05 genomic scaffold Scaffold992, whole genome shotgun sequence

⇒Summary: seq-len = 142934 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 141623-142559 bp Zoom in on locus 1 x10 x5 CRISPR array Location: 141623-142190 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 141623-142190 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 142292-142559 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 142292-142559 bp Num of repeats: 5 Spacers: s10-s13 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 141623-142190 bp]: array | spacers
           [Locus range 142292-142559 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)