CRISPRone

CRISPRone report for GCA_001811215.1_ASM181121v1

♦ Seq 1: KV803934.1 Pseudomonas sp. HMSC067D05 genomic scaffold Scaffold176, whole genome shotgun sequence

⇒Summary: seq-len = 334912 bp; # of CRISPR array = 3; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 39125-48587 bp Zoom in on locus 1 x11 x2 x2 CRISPR array Location: 39125-39753 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 39125-39753 bp Num of repeats: 11 Spacers: s1-s10 Gene: cd09739:cas6f Type: other Location: 39936-40499 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 40503-41531 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 41542-42525 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 42512-43816 bp Gene: COG1203:cas3 Type: Type-I Location: 43874-47104 bp Gene: cd09718:cas1 Type: universal Location: 47101-48075 bp CRISPR array Location: 48340-48427 bp Num of repeats: 2 Spacers: s11-s11 CRISPR array Location: 48340-48427 bp Num of repeats: 2 Spacers: s11-s11 CRISPR array Location: 48500-48587 bp Num of repeats: 2 Spacers: s12-s12 CRISPR array Location: 48500-48587 bp Num of repeats: 2 Spacers: s12-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 39125-39753 bp]: array | spacers
           [Locus range 48340-48427 bp]: array | spacers
           [Locus range 48500-48587 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: KV803933.1 Pseudomonas sp. HMSC067D05 genomic scaffold Scaffold173, whole genome shotgun sequence

⇒Summary: seq-len = 2464 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 854-1902 bp Zoom in on locus 1 x18 CRISPR array Location: 854-1902 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 854-1902 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 854-1902 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)