CRISPRone

CRISPRone report for GCA_001811225.1_ASM181122v1

♦ Seq 1: KZ672862.1 Pseudomonas sp. HMSC066B11 genomic scaffold Scaffold231, whole genome shotgun sequence

⇒Summary: seq-len = 38953 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38141-38950 bp Zoom in on locus 1 x14 CRISPR array Location: 38141-38950 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 38141-38950 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 38141-38950 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: KZ672899.1 Pseudomonas sp. HMSC066B11 genomic scaffold Scaffold525, whole genome shotgun sequence

⇒Summary: seq-len = 112177 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 259-1008 bp Zoom in on locus 1 x13 CRISPR array Location: 259-1008 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 259-1008 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 259-1008 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: KZ672816.1 Pseudomonas sp. HMSC066B11 genomic scaffold Scaffold32, whole genome shotgun sequence

⇒Summary: seq-len = 331 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-327 bp Zoom in on locus 1 x6 CRISPR array Location: 0-327 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 0-327 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-327 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: KZ672863.1 Pseudomonas sp. HMSC066B11 genomic scaffold Scaffold232, whole genome shotgun sequence

⇒Summary: seq-len = 11346 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 258-11344 bp Zoom in on locus 1 x23 x14 CRISPR array Location: 258-1607 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 258-1607 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09718:cas1 Type: universal Location: 1867-2841 bp Gene: COG1203:cas3 Type: Type-I Location: 2838-6068 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6479-7780 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7767-8750 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8761-9789 bp Gene: cd09739:cas6f Type: other Location: 9793-10356 bp CRISPR array Location: 10541-11344 bp Num of repeats: 14 Spacers: s23-s35 CRISPR array Location: 10541-11344 bp Num of repeats: 14 Spacers: s23-s35 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 258-1607 bp]: array | spacers
           [Locus range 10541-11344 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)