CRISPRone

CRISPRone report for GCA_001811975.1_ASM181197v1

♦ Seq 1: KV807290.1 Pseudomonas sp. HMSC066B03 genomic scaffold Scaffold22, whole genome shotgun sequence

⇒Summary: seq-len = 63399 bp; # of CRISPR array = 2; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 26248-34849 bp Zoom in on locus 1 x7 x5 Gene: cd09641:cas3HD Type: Type-I Location: 26248-28482 bp Gene: cd09752:cas5 Type: Subtype-I-C Location: 28533-29207 bp Gene: cd09757:cas8c Type: Subtype-I-C Location: 29204-30967 bp Gene: cd09689:cas7 Type: Subtype-I-C Location: 30979-31848 bp Gene: pfam01930:cas4 Type: Type-I Location: 31867-32499 bp Gene: cd09721:cas1 Type: universal Location: 32619-33542 bp Gene: cd09725:cas2 Type: universal Location: 33552-33842 bp CRISPR array Location: 34024-34450 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 34024-34450 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 34551-34849 bp Num of repeats: 5 Spacers: s7-s10 CRISPR array Location: 34551-34849 bp Num of repeats: 5 Spacers: s7-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 34024-34450 bp]: array | spacers
           [Locus range 34551-34849 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: KV807382.1 Pseudomonas sp. HMSC066B03 genomic scaffold Scaffold300, whole genome shotgun sequence

⇒Summary: seq-len = 232 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-230 bp Zoom in on locus 1 x4 CRISPR array Location: 1-230 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 1-230 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1-230 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)