CRISPRone

CRISPRone report for GCA_001812145.1_ASM181214v1

♦ Seq 1: KV807900.1 Pseudomonas sp. HMSC067F09 genomic scaffold Scaffold244, whole genome shotgun sequence

⇒Summary: seq-len = 47807 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37673-47512 bp Zoom in on locus 1 x3 x19 CRISPR array Location: 37673-37822 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 37673-37822 bp Num of repeats: 3 Spacers: s1-s2 Gene: cd09739:cas6f Type: other Location: 38005-38568 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 38572-39600 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 39611-40594 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 40581-41885 bp Gene: COG1203:cas3 Type: Type-I Location: 41943-45173 bp Gene: cd09718:cas1 Type: universal Location: 45170-46144 bp CRISPR array Location: 46405-47512 bp Num of repeats: 19 Spacers: s3-s20 CRISPR array Location: 46405-47512 bp Num of repeats: 19 Spacers: s3-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37673-37822 bp]: array | spacers
           [Locus range 46405-47512 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: KV807849.1 Pseudomonas sp. HMSC067F09 genomic scaffold Scaffold55, whole genome shotgun sequence

⇒Summary: seq-len = 1728 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 296-1166 bp Zoom in on locus 1 x15 CRISPR array Location: 296-1166 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 296-1166 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 296-1166 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)