CRISPRone

CRISPRone report for GCA_001814745.1_ASM181474v1

♦ Seq 1: KV817700.1 Pseudomonas sp. HMSC073F05 genomic scaffold Scaffold527, whole genome shotgun sequence

⇒Summary: seq-len = 39025 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38398-38966 bp Zoom in on locus 1 x10 CRISPR array Location: 38398-38966 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 38398-38966 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 38398-38966 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: KV817688.1 Pseudomonas sp. HMSC073F05 genomic scaffold Scaffold420, whole genome shotgun sequence

⇒Summary: seq-len = 421294 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 420408-421036 bp Zoom in on locus 1 x11 CRISPR array Location: 420408-421036 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 420408-421036 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 420408-421036 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: KV817629.1 Pseudomonas sp. HMSC073F05 genomic scaffold Scaffold75, whole genome shotgun sequence

⇒Summary: seq-len = 11503 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 39-11246 bp Zoom in on locus 1 x16 x23 CRISPR array Location: 39-964 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 39-964 bp Num of repeats: 16 Spacers: s1-s15 Gene: cd09739:cas6f Type: other Location: 1148-1711 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 1715-2743 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 2754-3737 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 3724-5025 bp Gene: COG1203:cas3 Type: Type-I Location: 5436-8666 bp Gene: cd09718:cas1 Type: universal Location: 8663-9637 bp CRISPR array Location: 9898-11246 bp Num of repeats: 23 Spacers: s16-s37 CRISPR array Location: 9898-11246 bp Num of repeats: 23 Spacers: s16-s37 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 39-964 bp]: array | spacers
           [Locus range 9898-11246 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)