CRISPRone

CRISPRone report for GCA_001836415.1_ASM183641v1

♦ Seq 1: KV828541.1 Pseudomonas sp. HMSC058B07 genomic scaffold Scaffold18, whole genome shotgun sequence

⇒Summary: seq-len = 329110 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 257411-268591 bp Zoom in on locus 1 x13 x20 CRISPR array Location: 257411-258172 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 257411-258172 bp Num of repeats: 13 Spacers: s1-s12 Gene: cd09641:cas3HD Type: Type-I Location: 258944-261625 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 261628-263196 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 263193-263723 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 263733-264875 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 264877-265539 bp Gene: pfam08798:cas6e Type: other Location: 265514-266125 bp Gene: cd09719:cas1 Type: universal Location: 266152-267042 bp Gene: pfam09707:cas2 Type: universal Location: 267039-267338 bp CRISPR array Location: 267403-268591 bp Num of repeats: 20 Spacers: s13-s31 CRISPR array Location: 267403-268591 bp Num of repeats: 20 Spacers: s13-s31 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 257411-258172 bp]: array | spacers
           [Locus range 267403-268591 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)