CRISPRone

CRISPRone report for GCA_001836505.1_ASM183650v1

♦ Seq 1: KV828932.1 Pseudomonas sp. HMSC059F05 genomic scaffold Scaffold229, whole genome shotgun sequence

⇒Summary: seq-len = 48948 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 294-10675 bp Zoom in on locus 1 x13 x18 CRISPR array Location: 294-1042 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 294-1042 bp Num of repeats: 13 Spacers: s1-s12 Gene: cd09718:cas1 Type: universal Location: 1306-2280 bp Gene: COG1203:cas3 Type: Type-I Location: 2277-5507 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5565-6869 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6856-7839 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7850-8878 bp Gene: cd09739:cas6f Type: other Location: 8882-9445 bp CRISPR array Location: 9628-10675 bp Num of repeats: 18 Spacers: s13-s29 CRISPR array Location: 9628-10675 bp Num of repeats: 18 Spacers: s13-s29 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 294-1042 bp]: array | spacers
           [Locus range 9628-10675 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: KV828909.1 Pseudomonas sp. HMSC059F05 genomic scaffold Scaffold141, whole genome shotgun sequence

⇒Summary: seq-len = 409279 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 296-1464 bp Zoom in on locus 1 x20 CRISPR array Location: 296-1464 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 296-1464 bp Num of repeats: 20 Spacers: s1-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 296-1464 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)