CRISPRone

CRISPRone report for GCA_001836655.1_ASM183665v1

♦ Seq 1: KV829833.1 Pseudomonas sp. HMSC060G02 genomic scaffold Scaffold12, whole genome shotgun sequence

⇒Summary: seq-len = 124513 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 123939-124266 bp Zoom in on locus 1 x6 CRISPR array Location: 123939-124266 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 123939-124266 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 123939-124266 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: KV829843.1 Pseudomonas sp. HMSC060G02 genomic scaffold Scaffold49, whole genome shotgun sequence

⇒Summary: seq-len = 48356 bp; # of CRISPR array = 5; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37528-48110 bp Zoom in on locus 1 x12 x5 x6 x5 x3 CRISPR array Location: 37528-38216 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 37528-38216 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 38312-38582 bp Num of repeats: 5 Spacers: s12-s15 CRISPR array Location: 38312-38582 bp Num of repeats: 5 Spacers: s12-s15 CRISPR array Location: 38686-39013 bp Num of repeats: 6 Spacers: s16-s20 CRISPR array Location: 38686-39013 bp Num of repeats: 6 Spacers: s16-s20 Gene: pfam09618:cas6f Type: Subtype-I-F Location: 39196-39759 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39763-40791 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40802-41785 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41772-43076 bp Gene: COG1203:cas3 Type: Type-I Location: 43134-46364 bp Gene: cd09718:cas1 Type: universal Location: 46361-47335 bp CRISPR array Location: 47596-47863 bp Num of repeats: 5 Spacers: s21-s24 CRISPR array Location: 47596-47863 bp Num of repeats: 5 Spacers: s21-s24 CRISPR array Location: 47963-48110 bp Num of repeats: 3 Spacers: s25-s26 CRISPR array Location: 47963-48110 bp Num of repeats: 3 Spacers: s25-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37528-38216 bp]: array | spacers
           [Locus range 38312-38582 bp]: array | spacers
           [Locus range 38686-39013 bp]: array | spacers
           [Locus range 47596-47863 bp]: array | spacers
           [Locus range 47963-48110 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)