CRISPRone

CRISPRone report for GCA_001836665.1_ASM183666v1

♦ Seq 1: KV830157.1 Pseudomonas sp. HMSC061A10 genomic scaffold Scaffold433, whole genome shotgun sequence

⇒Summary: seq-len = 48731 bp; # of CRISPR array = 4; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 256-10467 bp Zoom in on locus 1 x13 x3 x8 x2 CRISPR array Location: 256-1004 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 256-1004 bp Num of repeats: 13 Spacers: s1-s12 Gene: cd09718:cas1 Type: universal Location: 1268-2242 bp Gene: COG1203:cas3 Type: Type-I Location: 2239-5469 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5527-6831 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6818-7801 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7812-8840 bp Gene: cd09739:cas6f Type: other Location: 8844-9407 bp CRISPR array Location: 9590-9736 bp Num of repeats: 3 Spacers: s13-s14 CRISPR array Location: 9590-9736 bp Num of repeats: 3 Spacers: s13-s14 CRISPR array Location: 9835-10283 bp Num of repeats: 8 Spacers: s15-s21 CRISPR array Location: 9835-10283 bp Num of repeats: 8 Spacers: s15-s21 CRISPR array Location: 10380-10467 bp Num of repeats: 2 Spacers: s22-s22 CRISPR array Location: 10380-10467 bp Num of repeats: 2 Spacers: s22-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 256-1004 bp]: array | spacers
           [Locus range 9590-9736 bp]: array | spacers
           [Locus range 9835-10283 bp]: array | spacers
           [Locus range 10380-10467 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: KV830143.1 Pseudomonas sp. HMSC061A10 genomic scaffold Scaffold315, whole genome shotgun sequence

⇒Summary: seq-len = 113053 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 258-1810 bp Zoom in on locus 1 x8 x4 x6 x5 CRISPR array Location: 258-706 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 258-706 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 808-1016 bp Num of repeats: 4 Spacers: s8-s10 CRISPR array Location: 808-1016 bp Num of repeats: 4 Spacers: s8-s10 CRISPR array Location: 1118-1446 bp Num of repeats: 6 Spacers: s11-s15 CRISPR array Location: 1118-1446 bp Num of repeats: 6 Spacers: s11-s15 CRISPR array Location: 1542-1810 bp Num of repeats: 5 Spacers: s16-s19 CRISPR array Location: 1542-1810 bp Num of repeats: 5 Spacers: s16-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 258-706 bp]: array | spacers
           [Locus range 808-1016 bp]: array | spacers
           [Locus range 1118-1446 bp]: array | spacers
           [Locus range 1542-1810 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)