CRISPRone

CRISPRone report for GCA_001837545.1_ASM183754v1

♦ Seq 1: KV832866.1 Pseudomonas sp. HMSC070B12 genomic scaffold Scaffold85, whole genome shotgun sequence

⇒Summary: seq-len = 47755 bp; # of CRISPR array = 3; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 36676-46882 bp Zoom in on locus 1 x9 x4 x14 CRISPR array Location: 36676-37184 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 36676-37184 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 37284-37492 bp Num of repeats: 4 Spacers: s9-s11 CRISPR array Location: 37284-37492 bp Num of repeats: 4 Spacers: s9-s11 Gene: cd09739:cas6f Type: other Location: 37675-38238 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 38242-39270 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 39281-40264 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 40251-41555 bp Gene: COG1203:cas3 Type: Type-I Location: 41613-44843 bp Gene: cd09718:cas1 Type: universal Location: 44840-45814 bp CRISPR array Location: 46075-46882 bp Num of repeats: 14 Spacers: s12-s24 CRISPR array Location: 46075-46882 bp Num of repeats: 14 Spacers: s12-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 36676-37184 bp]: array | spacers
           [Locus range 37284-37492 bp]: array | spacers
           [Locus range 46075-46882 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)