CRISPRone

CRISPRone report for GCA_001837685.1_ASM183768v1

♦ Seq 1: KV833540.1 Pseudomonas sp. HMSC071F02 genomic scaffold Scaffold510, whole genome shotgun sequence

⇒Summary: seq-len = 523052 bp; # of CRISPR array = 4; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 26062-37270 bp Zoom in on locus 1 x11 x2 x2 x18 CRISPR array Location: 26062-26690 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 26062-26690 bp Num of repeats: 11 Spacers: s1-s10 Gene: cd09739:cas6f Type: other Location: 26873-27436 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 27440-28468 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 28479-29462 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 29449-30753 bp Gene: COG1203:cas3 Type: Type-I Location: 30811-34041 bp Gene: cd09718:cas1 Type: universal Location: 34038-35012 bp CRISPR array Location: 35277-35364 bp Num of repeats: 2 Spacers: s11-s11 CRISPR array Location: 35277-35364 bp Num of repeats: 2 Spacers: s11-s11 CRISPR array Location: 35437-35524 bp Num of repeats: 2 Spacers: s12-s12 CRISPR array Location: 35437-35524 bp Num of repeats: 2 Spacers: s12-s12 CRISPR array Location: 36223-37270 bp Num of repeats: 18 Spacers: s13-s29 CRISPR array Location: 36223-37270 bp Num of repeats: 18 Spacers: s13-s29 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 26062-26690 bp]: array | spacers
           [Locus range 35277-35364 bp]: array | spacers
           [Locus range 35437-35524 bp]: array | spacers
           [Locus range 36223-37270 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)