CRISPRone

CRISPRone report for GCA_001875165.1_ASM187516v1

♦ Seq 1: MPBV01000001.1 Pseudomonas aeruginosa strain AR_0054 scaffold00001, whole genome shotgun sequence

⇒Summary: seq-len = 2863301 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1616208-1626474 bp Zoom in on locus 1 x5 x13 CRISPR array Location: 1616208-1616481 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 1616208-1616481 bp Num of repeats: 5 Spacers: s1-s4 Gene: cd09641:cas3HD Type: Type-I Location: 1617254-1619935 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 1619938-1621506 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 1621503-1622033 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 1622043-1623185 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 1623187-1623849 bp Gene: pfam08798:cas6e Type: other Location: 1623824-1624435 bp Gene: cd09719:cas1 Type: universal Location: 1624462-1625352 bp Gene: pfam09707:cas2 Type: universal Location: 1625349-1625648 bp CRISPR array Location: 1625713-1626474 bp Num of repeats: 13 Spacers: s5-s16 CRISPR array Location: 1625713-1626474 bp Num of repeats: 13 Spacers: s5-s16 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1616208-1616481 bp]: array | spacers
           [Locus range 1625713-1626474 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MPBV01000002.1 Pseudomonas aeruginosa strain AR_0054 scaffold00002, whole genome shotgun sequence

⇒Summary: seq-len = 1929259 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 277088-288314 bp 2 Locus 2: 803627-810749 bp Zoom in on locus 1 x19 x25 Zoom in on locus 2 CRISPR array Location: 277088-278196 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 277088-278196 bp Num of repeats: 19 Spacers: s1-s18 Gene: cd09718:cas1 Type: universal Location: 278456-279430 bp Gene: COG1203:cas3 Type: Type-I Location: 279427-282657 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 282715-284019 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 284006-284989 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 285000-286028 bp Gene: cd09739:cas6f Type: other Location: 286032-286595 bp CRISPR array Location: 286845-288314 bp Num of repeats: 25 Spacers: s19-s42 CRISPR array Location: 286845-288314 bp Num of repeats: 25 Spacers: s19-s42 Gene: pfam13280:WYL Type: other Location: 803627-804499 bp Gene: pfam13280:WYL Type: other Location: 804734-805780 bp Gene: pfam13280:WYL Type: other Location: 809754-810749 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 277088-278196 bp]: array | spacers
           [Locus range 286845-288314 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)