CRISPRone

CRISPRone report for GCA_001875215.1_ASM187521v1

♦ Seq 1: MPBN01000001.1 Pseudomonas aeruginosa strain AR_0108 scaffold00001, whole genome shotgun sequence

⇒Summary: seq-len = 6879367 bp; # of CRISPR array = 3; # of cas gene = 10  (type I, IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2668888-2680466 bp 2 Locus 2: 4268886-4269753 bp 3 Locus 3: 6169185-6177446 bp Zoom in on locus 1 x28 x23 Zoom in on locus 2 x15 Zoom in on locus 3 CRISPR array Location: 2668888-2670537 bp Num of repeats: 28 Spacers: s1-s27 CRISPR array Location: 2668888-2670537 bp Num of repeats: 28 Spacers: s1-s27 Gene: cd09718:cas1 Type: universal Location: 2670798-2671772 bp Gene: COG1203:cas3 Type: Type-I Location: 2671769-2674999 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 2675057-2676361 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 2676348-2677331 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 2677342-2678370 bp Gene: cd09739:cas6f Type: other Location: 2678374-2678937 bp CRISPR array Location: 2679122-2680466 bp Num of repeats: 23 Spacers: s28-s49 CRISPR array Location: 2679122-2680466 bp Num of repeats: 23 Spacers: s28-s49 CRISPR array Location: 4268886-4269753 bp Num of repeats: 15 Spacers: s50-s63 CRISPR array Location: 4268886-4269753 bp Num of repeats: 15 Spacers: s50-s63 Gene: mkCas0115:csx3 Type: other Location: 6169185-6170795 bp Gene: pfam13280:WYL Type: other Location: 6170956-6171972 bp Gene: COG2378:WYL Type: other Location: 6172714-6173556 bp Gene: unk Type: unknown Location: 6173810-6173965 bp Gene: unk Type: unknown Location: 6174109-6174687 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 6175080-6177446 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 2668888-2670537 bp]: array | spacers
           [Locus range 2679122-2680466 bp]: array | spacers
           [Locus range 4268886-4269753 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)