CRISPRone

CRISPRone report for GCA_001900195.1_ASM190019v1

♦ Seq 1: CP013477.1 Pseudomonas aeruginosa strain SCVFeb, complete genome

⇒Summary: seq-len = 6213026 bp; # of CRISPR array = 4; # of cas gene = 14  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2793712-2804265 bp 2 Locus 2: 4112483-4123479 bp Zoom in on locus 1 x15 x19 Zoom in on locus 2 x18 x12 CRISPR array Location: 2793712-2794575 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 2793712-2794575 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09739:cas6f Type: other Location: 2794758-2795321 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 2795325-2796353 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 2796364-2797347 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 2797334-2798638 bp Gene: COG1203:cas3 Type: Type-I Location: 2798696-2801926 bp Gene: cd09718:cas1 Type: universal Location: 2801923-2802897 bp CRISPR array Location: 2803159-2804265 bp Num of repeats: 19 Spacers: s15-s32 CRISPR array Location: 2803159-2804265 bp Num of repeats: 19 Spacers: s15-s32 CRISPR array Location: 4112483-4113548 bp Num of repeats: 18 Spacers: s33-s49 CRISPR array Location: 4112483-4113548 bp Num of repeats: 18 Spacers: s33-s49 Gene: pfam09707:cas2 Type: universal Location: 4113613-4113912 bp Gene: cd09719:cas1 Type: universal Location: 4113909-4114799 bp Gene: pfam08798:cas6e Type: other Location: 4114826-4115365 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 4115412-4116074 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 4116076-4117218 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 4117228-4117758 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 4117755-4119323 bp Gene: cd09641:cas3HD Type: Type-I Location: 4119326-4122007 bp CRISPR array Location: 4122780-4123479 bp Num of repeats: 12 Spacers: s50-s60 CRISPR array Location: 4122780-4123479 bp Num of repeats: 12 Spacers: s50-s60 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 2793712-2794575 bp]: array | spacers
           [Locus range 2803159-2804265 bp]: array | spacers
           [Locus range 4112483-4113548 bp]: array | spacers
           [Locus range 4122780-4123479 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)