CRISPRone

CRISPRone report for GCA_001900225.1_ASM190022v1

♦ Seq 1: CP013478.1 Pseudomonas aeruginosa strain SCVJan, complete genome

⇒Summary: seq-len = 6213029 bp; # of CRISPR array = 4; # of cas gene = 14  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2793712-2804265 bp 2 Locus 2: 4112486-4123482 bp Zoom in on locus 1 x15 x19 Zoom in on locus 2 x18 x12 CRISPR array Location: 2793712-2794575 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 2793712-2794575 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09739:cas6f Type: other Location: 2794758-2795321 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 2795325-2796353 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 2796364-2797347 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 2797334-2798638 bp Gene: COG1203:cas3 Type: Type-I Location: 2798696-2801926 bp Gene: cd09718:cas1 Type: universal Location: 2801923-2802897 bp CRISPR array Location: 2803159-2804265 bp Num of repeats: 19 Spacers: s15-s32 CRISPR array Location: 2803159-2804265 bp Num of repeats: 19 Spacers: s15-s32 CRISPR array Location: 4112486-4113551 bp Num of repeats: 18 Spacers: s33-s49 CRISPR array Location: 4112486-4113551 bp Num of repeats: 18 Spacers: s33-s49 Gene: pfam09707:cas2 Type: universal Location: 4113616-4113915 bp Gene: cd09719:cas1 Type: universal Location: 4113912-4114802 bp Gene: pfam08798:cas6e Type: other Location: 4114829-4115368 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 4115415-4116077 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 4116079-4117221 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 4117231-4117761 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 4117758-4119326 bp Gene: cd09641:cas3HD Type: Type-I Location: 4119329-4122010 bp CRISPR array Location: 4122783-4123482 bp Num of repeats: 12 Spacers: s50-s60 CRISPR array Location: 4122783-4123482 bp Num of repeats: 12 Spacers: s50-s60 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 2793712-2794575 bp]: array | spacers
           [Locus range 2803159-2804265 bp]: array | spacers
           [Locus range 4112486-4113551 bp]: array | spacers
           [Locus range 4122783-4123482 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)