CRISPRone

CRISPRone report for GCA_001900265.1_ASM190026v1

♦ Seq 1: CP013479.1 Pseudomonas aeruginosa strain NHmuc, complete genome

⇒Summary: seq-len = 6213276 bp; # of CRISPR array = 4; # of cas gene = 14  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1812040-1823037 bp 2 Locus 2: 3131254-3141807 bp Zoom in on locus 1 x12 x18 Zoom in on locus 2 x19 x15 CRISPR array Location: 1812040-1812740 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 1812040-1812740 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09641:cas3HD Type: Type-I Location: 1813512-1816193 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 1816196-1817764 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 1817761-1818291 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 1818301-1819443 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 1819445-1820107 bp Gene: pfam08798:cas6e Type: other Location: 1820154-1820693 bp Gene: cd09719:cas1 Type: universal Location: 1820720-1821610 bp Gene: pfam09707:cas2 Type: universal Location: 1821607-1821906 bp CRISPR array Location: 1821971-1823037 bp Num of repeats: 18 Spacers: s12-s28 CRISPR array Location: 1821971-1823037 bp Num of repeats: 18 Spacers: s12-s28 CRISPR array Location: 3131254-3132361 bp Num of repeats: 19 Spacers: s29-s46 CRISPR array Location: 3131254-3132361 bp Num of repeats: 19 Spacers: s29-s46 Gene: cd09718:cas1 Type: universal Location: 3132622-3133596 bp Gene: COG1203:cas3 Type: Type-I Location: 3133593-3136823 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 3136881-3138185 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 3138172-3139155 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 3139166-3140194 bp Gene: cd09739:cas6f Type: other Location: 3140198-3140761 bp CRISPR array Location: 3140945-3141807 bp Num of repeats: 15 Spacers: s47-s60 CRISPR array Location: 3140945-3141807 bp Num of repeats: 15 Spacers: s47-s60 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1812040-1812740 bp]: array | spacers
           [Locus range 1821971-1823037 bp]: array | spacers
           [Locus range 3131254-3132361 bp]: array | spacers
           [Locus range 3140945-3141807 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)