CRISPRone

CRISPRone report for GCA_001909445.1_ASM190944v1

♦ Seq 1: MPUW01000207.1 Pseudomonas aeruginosa strain 515477 contig_207, whole genome shotgun sequence

⇒Summary: seq-len = 44099 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 32753-43567 bp Zoom in on locus 1 x14 x24 CRISPR array Location: 32753-33561 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 32753-33561 bp Num of repeats: 14 Spacers: s1-s13 Gene: cd09739:cas6f Type: other Location: 33733-34296 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 34300-35328 bp Gene: pfam09614:cas5f Type: Subtype-I-F Location: 35339-36322 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 36309-37613 bp Gene: COG1203:cas3 Type: Type-I Location: 37671-40907 bp Gene: cd09718:cas1 Type: universal Location: 40904-41878 bp CRISPR array Location: 42159-43567 bp Num of repeats: 24 Spacers: s14-s36 CRISPR array Location: 42159-43567 bp Num of repeats: 24 Spacers: s14-s36 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 32753-33561 bp]: array | spacers
           [Locus range 42159-43567 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MPUW01000030.1 Pseudomonas aeruginosa strain 515477 contig_30, whole genome shotgun sequence

⇒Summary: seq-len = 195929 bp; # of CRISPR array = 1; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 70759-81344 bp 2 Locus 2: 140769-141578 bp Zoom in on locus 1 Zoom in on locus 2 x14 Gene: COG0640:csa3 Type: Subtype-I-A Location: 70759-71628 bp Gene: pfam00078:RT Type: other Location: 76537-77805 bp Gene: unk Type: unknown Location: 77955-78353 bp Gene: unk Type: unknown Location: 78537-78716 bp Gene: cls000170:cas4 Type: Type-I Location: 79800-81344 bp CRISPR array Location: 140769-141578 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 140769-141578 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 140769-141578 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MPUW01000177.1 Pseudomonas aeruginosa strain 515477 contig_177, whole genome shotgun sequence

⇒Summary: seq-len = 725 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 396-603 bp Zoom in on locus 1 x4 CRISPR array Location: 396-603 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 396-603 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 396-603 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)