CRISPRone

CRISPRone report for GCA_001909655.1_ASM190965v1

♦ Seq 1: MPUX01000070.1 Pseudomonas aeruginosa strain 549782 contig_70, whole genome shotgun sequence

⇒Summary: seq-len = 162050 bp; # of CRISPR array = 0; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 108857-131431 bp Zoom in on locus 1 Gene: cd09637:cas4 Type: other Location: 108857-112255 bp Gene: unk Type: unknown Location: 112287-113768 bp Gene: unk Type: unknown Location: 113967-114548 bp Gene: mkCas0151:cas8b10 Type: Subtype-I-B Location: 114541-115929 bp Gene: unk Type: unknown Location: 115959-118934 bp Gene: unk Type: unknown Location: 118931-119752 bp Gene: pfam13280:WYL Type: other Location: 120074-120949 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 130286-131431 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MPUX01000083.1 Pseudomonas aeruginosa strain 549782 contig_83, whole genome shotgun sequence

⇒Summary: seq-len = 9648 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-9660 bp Zoom in on locus 1 x6 x13 CRISPR array Location: 1-329 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 1-329 bp Num of repeats: 6 Spacers: s1-s5 Gene: cd09718:cas1 Type: universal Location: 590-1564 bp Gene: COG1203:cas3 Type: Type-I Location: 1561-4791 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 4849-6153 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6140-7123 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7134-8162 bp Gene: cd09739:cas6f Type: other Location: 8166-8729 bp CRISPR array Location: 8913-9660 bp Num of repeats: 13 Spacers: s6-s17 CRISPR array Location: 8913-9660 bp Num of repeats: 13 Spacers: s6-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1-329 bp]: array | spacers
           [Locus range 8913-9660 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MPUX01000154.1 Pseudomonas aeruginosa strain 549782 contig_154, whole genome shotgun sequence

⇒Summary: seq-len = 1567 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-377 bp Zoom in on locus 1 x7 CRISPR array Location: 0-377 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 0-377 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-377 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)