CRISPRone

CRISPRone report for GCA_001910115.1_ASM191011v1

♦ Seq 1: MPVH01000042.1 Pseudomonas aeruginosa strain CLB24402 contig_42, whole genome shotgun sequence

⇒Summary: seq-len = 7667 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 339-1087 bp Zoom in on locus 1 x13 CRISPR array Location: 339-1087 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 339-1087 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 339-1087 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MPVH01000025.1 Pseudomonas aeruginosa strain CLB24402 contig_25, whole genome shotgun sequence

⇒Summary: seq-len = 11133 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 636-10344 bp Zoom in on locus 1 x4 x10 CRISPR array Location: 636-844 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 636-844 bp Num of repeats: 4 Spacers: s1-s3 Gene: cd09739:cas6f Type: other Location: 1027-1590 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 1594-2622 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 2633-3616 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 3603-4904 bp Gene: COG1203:cas3 Type: Type-I Location: 5315-8545 bp Gene: cd09718:cas1 Type: universal Location: 8542-9516 bp CRISPR array Location: 9777-10344 bp Num of repeats: 10 Spacers: s4-s12 CRISPR array Location: 9777-10344 bp Num of repeats: 10 Spacers: s4-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 636-844 bp]: array | spacers
           [Locus range 9777-10344 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MPVH01000027.1 Pseudomonas aeruginosa strain CLB24402 contig_27, whole genome shotgun sequence

⇒Summary: seq-len = 34822 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 109-797 bp Zoom in on locus 1 x12 CRISPR array Location: 109-797 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 109-797 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 109-797 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)