CRISPRone

CRISPRone report for GCA_001910265.1_ASM191026v1

♦ Seq 1: MPUL01000025.1 Pseudomonas aeruginosa strain CCF_696 contig_25, whole genome shotgun sequence

⇒Summary: seq-len = 49325 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38191-49338 bp Zoom in on locus 1 x27 x11 CRISPR array Location: 38191-39776 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 38191-39776 bp Num of repeats: 27 Spacers: s1-s26 Gene: cd09739:cas6f Type: other Location: 39960-40523 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 40527-41555 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 41566-42549 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 42536-43837 bp Gene: COG1203:cas3 Type: Type-I Location: 44248-47478 bp Gene: cd09718:cas1 Type: universal Location: 47475-48449 bp CRISPR array Location: 48710-49338 bp Num of repeats: 11 Spacers: s27-s36 CRISPR array Location: 48710-49338 bp Num of repeats: 11 Spacers: s27-s36 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38191-39776 bp]: array | spacers
           [Locus range 48710-49338 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MPUL01000092.1 Pseudomonas aeruginosa strain CCF_696 contig_92, whole genome shotgun sequence

⇒Summary: seq-len = 22954 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 22386-22954 bp Zoom in on locus 1 x10 CRISPR array Location: 22386-22954 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 22386-22954 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 22386-22954 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MPUL01000108.1 Pseudomonas aeruginosa strain CCF_696 contig_108, whole genome shotgun sequence

⇒Summary: seq-len = 210637 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 62320-63068 bp Zoom in on locus 1 x13 CRISPR array Location: 62320-63068 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 62320-63068 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 62320-63068 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)