CRISPRone

CRISPRone report for GCA_001910375.1_ASM191037v1

♦ Seq 1: MPUV01000138.1 Pseudomonas aeruginosa strain 514747 contig_138, whole genome shotgun sequence

⇒Summary: seq-len = 46148 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 518-11427 bp Zoom in on locus 1 x23 x17 CRISPR array Location: 518-1866 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 518-1866 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09718:cas1 Type: universal Location: 2117-3091 bp Gene: COG1203:cas3 Type: Type-I Location: 3088-6318 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6376-7680 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7667-8650 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8661-9689 bp Gene: cd09739:cas6f Type: other Location: 9693-10256 bp CRISPR array Location: 10440-11427 bp Num of repeats: 17 Spacers: s23-s38 CRISPR array Location: 10440-11427 bp Num of repeats: 17 Spacers: s23-s38 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 518-1866 bp]: array | spacers
           [Locus range 10440-11427 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MPUV01000039.1 Pseudomonas aeruginosa strain 514747 contig_39, whole genome shotgun sequence

⇒Summary: seq-len = 70093 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 62559-63007 bp Zoom in on locus 1 x8 CRISPR array Location: 62559-63007 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 62559-63007 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 62559-63007 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)