CRISPRone

CRISPRone report for GCA_001913915.1_ASM191391v1

♦ Seq 1: MKXQ01000063.1 Clostridioides difficile isolate 0119A_29_11 qb307082014_J_scaffold_79, whole genome shotgun sequence

⇒Summary: seq-len = 56060 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 34-326 bp Zoom in on locus 1 x5 CRISPR array Location: 34-326 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 34-326 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 34-326 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MKXQ01000109.1 Clostridioides difficile isolate 0119A_29_11 qb307082014_J_scaffold_89, whole genome shotgun sequence

⇒Summary: seq-len = 50106 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1602-2622 bp Zoom in on locus 1 x16 CRISPR array Location: 1602-2622 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 1602-2622 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1602-2622 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MKXQ01000038.1 Clostridioides difficile isolate 0119A_29_11 qb307082014_J_scaffold_139, whole genome shotgun sequence

⇒Summary: seq-len = 27654 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-274 bp Zoom in on locus 1 x5 CRISPR array Location: 0-274 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 0-274 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-274 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: MKXQ01000091.1 Clostridioides difficile isolate 0119A_29_11 qb307082014_J_scaffold_213, whole genome shotgun sequence

⇒Summary: seq-len = 15564 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11884-12638 bp Zoom in on locus 1 x12 CRISPR array Location: 11884-12638 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 11884-12638 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 11884-12638 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: MKXQ01000051.1 Clostridioides difficile isolate 0119A_29_11 qb307082014_J_scaffold_137, whole genome shotgun sequence

⇒Summary: seq-len = 28472 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17742-18298 bp Zoom in on locus 1 x9 CRISPR array Location: 17742-18298 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 17742-18298 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17742-18298 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: MKXQ01000111.1 Clostridioides difficile isolate 0119A_29_11 qb307082014_J_scaffold_29, whole genome shotgun sequence

⇒Summary: seq-len = 130528 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-3383 bp Zoom in on locus 1 Gene: cd09754:cas8b2 Type: Subtype-I-B Location: 2-1648 bp Gene: pfam01881:cas6 Type: other Location: 1654-2448 bp Gene: pfam13280:WYL Type: other Location: 2469-3383 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: MKXQ01000115.1 Clostridioides difficile isolate 0119A_29_11 qb307082014_J_scaffold_169, whole genome shotgun sequence

⇒Summary: seq-len = 20459 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12653-12746 bp Zoom in on locus 1 x2 CRISPR array Location: 12653-12746 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 12653-12746 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 12653-12746 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: MKXQ01000110.1 Clostridioides difficile isolate 0119A_29_11 qb307082014_J_scaffold_175, whole genome shotgun sequence

⇒Summary: seq-len = 19262 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11689-19260 bp Zoom in on locus 1 x22 CRISPR array Location: 11689-13098 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 11689-13098 bp Num of repeats: 22 Spacers: s1-s21 Gene: cd09725:cas2 Type: universal Location: 13282-13548 bp Gene: cd09722:cas1 Type: universal Location: 13551-14531 bp Gene: pfam01930:cas4 Type: Type-I Location: 14534-15052 bp Gene: COG1203:cas3 Type: Type-I Location: 15100-17421 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 17432-18133 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 18135-19049 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 19051-19260 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 11689-13098 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: MKXQ01000138.1 Clostridioides difficile isolate 0119A_29_11 qb307082014_J_scaffold_394, whole genome shotgun sequence

⇒Summary: seq-len = 2144 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 184-610 bp Zoom in on locus 1 x7 CRISPR array Location: 184-610 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 184-610 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 184-610 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: MKXQ01000095.1 Clostridioides difficile isolate 0119A_29_11 qb307082014_J_scaffold_58, whole genome shotgun sequence

⇒Summary: seq-len = 78864 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18951-27297 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 18951-21359 bp Gene: cd09693:cas5 Type: Type-I Location: 21386-22183 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 22199-23215 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 23235-24710 bp Gene: pfam01881:cas6 Type: other Location: 24715-25452 bp Gene: unk Type: unknown Location: 25553-25729 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 26188-27297 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: MKXQ01000037.1 Clostridioides difficile isolate 0119A_29_11 qb307082014_J_scaffold_392, whole genome shotgun sequence

⇒Summary: seq-len = 2176 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1864-2155 bp Zoom in on locus 1 x5 CRISPR array Location: 1864-2155 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 1864-2155 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1864-2155 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 12: MKXQ01000097.1 Clostridioides difficile isolate 0119A_29_11 qb307082014_J_scaffold_244, whole genome shotgun sequence

⇒Summary: seq-len = 11937 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9724-10281 bp Zoom in on locus 1 x9 CRISPR array Location: 9724-10281 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 9724-10281 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 9724-10281 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 13: MKXQ01000108.1 Clostridioides difficile isolate 0119A_29_11 qb307082014_J_scaffold_93, whole genome shotgun sequence

⇒Summary: seq-len = 46680 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45878-46497 bp Zoom in on locus 1 x10 CRISPR array Location: 45878-46497 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 45878-46497 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 45878-46497 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 14: MKXQ01000145.1 Clostridioides difficile isolate 0119A_29_11 qb307082014_J_scaffold_468, whole genome shotgun sequence

⇒Summary: seq-len = 1373 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 594-1351 bp Zoom in on locus 1 x12 CRISPR array Location: 594-1351 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 594-1351 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 594-1351 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 15: MKXQ01000044.1 Clostridioides difficile isolate 0119A_29_11 qb307082014_J_scaffold_164, whole genome shotgun sequence

⇒Summary: seq-len = 21153 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12432-13191 bp Zoom in on locus 1 x12 CRISPR array Location: 12432-13191 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 12432-13191 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 12432-13191 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 16: MKXQ01000077.1 Clostridioides difficile isolate 0119A_29_11 qb307082014_J_scaffold_150, whole genome shotgun sequence

⇒Summary: seq-len = 24756 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 890-1050 bp Zoom in on locus 1 x3 CRISPR array Location: 890-1050 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 890-1050 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 890-1050 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)