CRISPRone

CRISPRone report for GCA_001971825.1_ASM197182v1

♦ Seq 1: MTVT01000023.1 Clostridioides difficile strain 20110869 scaffold00023, whole genome shotgun sequence

⇒Summary: seq-len = 86539 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 49052-50463 bp Zoom in on locus 1 x22 CRISPR array Location: 49052-50463 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 49052-50463 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 49052-50463 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MTVT01000041.1 Clostridioides difficile strain 20110869 scaffold00041, whole genome shotgun sequence

⇒Summary: seq-len = 142327 bp; # of CRISPR array = 1; # of cas gene = 7  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 33299-41163 bp 2 Locus 2: 114449-114944 bp Zoom in on locus 1 Zoom in on locus 2 x8 Gene: cd09641:cas3HD Type: Type-I Location: 33299-35707 bp Gene: cd09693:cas5 Type: Type-I Location: 35734-36531 bp Gene: cd09650:cas7 Type: Type-I Location: 36547-36933 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 36930-37559 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 37579-39054 bp Gene: pfam01881:cas6 Type: other Location: 39059-39796 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 40054-41163 bp CRISPR array Location: 114449-114944 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 114449-114944 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 114449-114944 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MTVT01000044.1 Clostridioides difficile strain 20110869 scaffold00044, whole genome shotgun sequence

⇒Summary: seq-len = 569964 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 101057-111809 bp Zoom in on locus 1 x9 CRISPR array Location: 101057-101605 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 101057-101605 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09725:cas2 Type: universal Location: 101789-102055 bp Gene: cd09722:cas1 Type: universal Location: 102058-103038 bp Gene: pfam01930:cas4 Type: Type-I Location: 103122-103559 bp Gene: COG1203:cas3 Type: Type-I Location: 103607-105928 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 105939-106640 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 106642-107556 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 107558-108937 bp Gene: cd09754:cas8b2 Type: Subtype-I-B Location: 108998-110074 bp Gene: pfam01881:cas6 Type: other Location: 110080-110874 bp Gene: pfam13280:WYL Type: other Location: 110895-111809 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 101057-101605 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: MTVT01000017.1 Clostridioides difficile strain 20110869 scaffold00017, whole genome shotgun sequence

⇒Summary: seq-len = 168734 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 118068-118887 bp Zoom in on locus 1 x13 CRISPR array Location: 118068-118887 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 118068-118887 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 118068-118887 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: MTVT01000015.1 Clostridioides difficile strain 20110869 scaffold00015, whole genome shotgun sequence

⇒Summary: seq-len = 108828 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 55724-55885 bp 2 Locus 2: 79796-85465 bp Zoom in on locus 1 x3 Zoom in on locus 2 x5 x5 x2 CRISPR array Location: 55724-55885 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 55724-55885 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 79796-80089 bp Num of repeats: 5 Spacers: s3-s6 CRISPR array Location: 79796-80089 bp Num of repeats: 5 Spacers: s3-s6 CRISPR array Location: 82732-83025 bp Num of repeats: 5 Spacers: s7-s10 CRISPR array Location: 82732-83025 bp Num of repeats: 5 Spacers: s7-s10 CRISPR array Location: 85372-85465 bp Num of repeats: 2 Spacers: s11-s11 CRISPR array Location: 85372-85465 bp Num of repeats: 2 Spacers: s11-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 55724-55885 bp]: array | spacers
           [Locus range 79796-80089 bp]: array | spacers
           [Locus range 82732-83025 bp]: array | spacers
           [Locus range 85372-85465 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: MTVT01000038.1 Clostridioides difficile strain 20110869 scaffold00038, whole genome shotgun sequence

⇒Summary: seq-len = 89740 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18297-18718 bp Zoom in on locus 1 x7 CRISPR array Location: 18297-18718 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 18297-18718 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18297-18718 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: MTVT01000019.1 Clostridioides difficile strain 20110869 scaffold00019, whole genome shotgun sequence

⇒Summary: seq-len = 64166 bp; # of CRISPR array = 1; # of cas gene = 3  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1812-4104 bp 2 Locus 2: 36528-37020 bp Zoom in on locus 1 Zoom in on locus 2 x8 Gene: mkCas0136:csm2gr11 Type: Subtype-III-A Location: 1812-2411 bp Gene: unk Type: unknown Location: 2581-3048 bp Gene: COG2378:WYL Type: other Location: 3159-3557 bp Gene: pfam13280:WYL Type: other Location: 3601-4104 bp CRISPR array Location: 36528-37020 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 36528-37020 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 36528-37020 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: MTVT01000033.1 Clostridioides difficile strain 20110869 scaffold00033, whole genome shotgun sequence

⇒Summary: seq-len = 54317 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 47541-47634 bp Zoom in on locus 1 x2 CRISPR array Location: 47541-47634 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 47541-47634 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 47541-47634 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)