CRISPRone

CRISPRone report for GCA_001971835.1_ASM197183v1

♦ Seq 1: MTVP01000005.1 Clostridioides difficile strain 20100211 scaffold00005, whole genome shotgun sequence

⇒Summary: seq-len = 1185440 bp; # of CRISPR array = 2; # of cas gene = 15  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 261257-272439 bp 2 Locus 2: 508262-514794 bp Zoom in on locus 1 x25 Zoom in on locus 2 x10 CRISPR array Location: 261257-262874 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 261257-262874 bp Num of repeats: 25 Spacers: s1-s24 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 262103-262336 bp Gene: unk Type: unknown Location: 262558-262725 bp Gene: cd09725:cas2 Type: universal Location: 263058-263324 bp Gene: cd09722:cas1 Type: universal Location: 263327-264307 bp Gene: pfam01930:cas4 Type: Type-I Location: 264310-264828 bp Gene: COG1203:cas3 Type: Type-I Location: 264876-267197 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 267208-267909 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 267911-268825 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 268827-270704 bp Gene: pfam01881:cas6 Type: other Location: 270710-271504 bp Gene: pfam13280:WYL Type: other Location: 271525-272439 bp CRISPR array Location: 508262-508884 bp Num of repeats: 10 Spacers: s25-s33 CRISPR array Location: 508262-508884 bp Num of repeats: 10 Spacers: s25-s33 Gene: COG1203:cas3 Type: Type-I Location: 509137-511122 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 511133-512203 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 512224-513390 bp Gene: pfam01881:cas6 Type: other Location: 513392-514156 bp Gene: cd09693:cas5 Type: Type-I Location: 514147-514794 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 261257-262874 bp]: array | spacers
           [Locus range 508262-508884 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MTVP01000004.1 Clostridioides difficile strain 20100211 scaffold00004, whole genome shotgun sequence

⇒Summary: seq-len = 2845247 bp; # of CRISPR array = 8; # of cas gene = 9  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1155308-1156266 bp 2 Locus 2: 1364654-1365341 bp 3 Locus 3: 1441288-1445301 bp 4 Locus 4: 1476025-1476319 bp 5 Locus 5: 1568702-1571213 bp 6 Locus 6: 1708491-1709315 bp 7 Locus 7: 2017092-2017186 bp 8 Locus 8: 2058806-2059431 bp 9 Locus 9: 2519682-2527557 bp Zoom in on locus 1 x15 Zoom in on locus 2 x11 Zoom in on locus 3 Zoom in on locus 4 x5 Zoom in on locus 5 x6 x5 Zoom in on locus 6 x13 Zoom in on locus 7 x2 Zoom in on locus 8 x10 Zoom in on locus 9 CRISPR array Location: 1155308-1156266 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1155308-1156266 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1364654-1365341 bp Num of repeats: 11 Spacers: s15-s24 CRISPR array Location: 1364654-1365341 bp Num of repeats: 11 Spacers: s15-s24 Gene: mkCas0136:csm2gr11 Type: Subtype-III-A Location: 1441288-1441887 bp Gene: unk Type: unknown Location: 1442055-1442522 bp Gene: COG2378:WYL Type: other Location: 1442627-1443544 bp Gene: cas14:cas14 Type: Type-V Location: 1444183-1445301 bp CRISPR array Location: 1476025-1476319 bp Num of repeats: 5 Spacers: s25-s28 CRISPR array Location: 1476025-1476319 bp Num of repeats: 5 Spacers: s25-s28 CRISPR array Location: 1568702-1569059 bp Num of repeats: 6 Spacers: s29-s33 CRISPR array Location: 1568702-1569059 bp Num of repeats: 6 Spacers: s29-s33 CRISPR array Location: 1570923-1571213 bp Num of repeats: 5 Spacers: s34-s37 CRISPR array Location: 1570923-1571213 bp Num of repeats: 5 Spacers: s34-s37 CRISPR array Location: 1708491-1709315 bp Num of repeats: 13 Spacers: s38-s49 CRISPR array Location: 1708491-1709315 bp Num of repeats: 13 Spacers: s38-s49 CRISPR array Location: 2017092-2017186 bp Num of repeats: 2 Spacers: s50-s50 CRISPR array Location: 2017092-2017186 bp Num of repeats: 2 Spacers: s50-s50 CRISPR array Location: 2058806-2059431 bp Num of repeats: 10 Spacers: s51-s59 CRISPR array Location: 2058806-2059431 bp Num of repeats: 10 Spacers: s51-s59 Gene: cd09641:cas3HD Type: Type-I Location: 2519682-2522090 bp Gene: cd09693:cas5 Type: Type-I Location: 2522117-2522923 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2522939-2523952 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2523972-2525447 bp Gene: pfam01881:cas6 Type: other Location: 2525452-2526189 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2526448-2527557 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1155308-1156266 bp]: array | spacers
           [Locus range 1364654-1365341 bp]: array | spacers
           [Locus range 1476025-1476319 bp]: array | spacers
           [Locus range 1568702-1569059 bp]: array | spacers
           [Locus range 1570923-1571213 bp]: array | spacers
           [Locus range 1708491-1709315 bp]: array | spacers
           [Locus range 2017092-2017186 bp]: array | spacers
           [Locus range 2058806-2059431 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)