CRISPRone

CRISPRone report for GCA_001971865.1_ASM197186v1

♦ Seq 1: MTVQ01000001.1 Clostridioides difficile strain 20100502 scaffold00001, whole genome shotgun sequence

⇒Summary: seq-len = 3853484 bp; # of CRISPR array = 13; # of cas gene = 18  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1301813-1302306 bp 2 Locus 2: 1510479-1510573 bp 3 Locus 3: 1588680-1592699 bp 4 Locus 4: 1623424-1624116 bp 5 Locus 5: 1705642-1705867 bp 6 Locus 6: 1865793-1866215 bp 7 Locus 7: 2175292-2175453 bp 8 Locus 8: 2217664-2223761 bp 9 Locus 9: 2258329-2259146 bp 10 Locus 10: 2277219-2278241 bp 11 Locus 11: 2747663-2755538 bp 12 Locus 12: 3325715-3337157 bp Zoom in on locus 1 x8 Zoom in on locus 2 x2 Zoom in on locus 3 Zoom in on locus 4 x11 Zoom in on locus 5 x4 Zoom in on locus 6 x7 Zoom in on locus 7 x3 Zoom in on locus 8 x8 x3 x4 x6 Zoom in on locus 9 x13 Zoom in on locus 10 x16 Zoom in on locus 11 Zoom in on locus 12 x29 CRISPR array Location: 1301813-1302306 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 1301813-1302306 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 1510479-1510573 bp Num of repeats: 2 Spacers: s8-s8 CRISPR array Location: 1510479-1510573 bp Num of repeats: 2 Spacers: s8-s8 Gene: mkCas0136:csm2gr11 Type: Subtype-III-A Location: 1588680-1589279 bp Gene: unk Type: unknown Location: 1589449-1589916 bp Gene: COG2378:WYL Type: other Location: 1590031-1590942 bp Gene: cas14:cas14 Type: Type-V Location: 1591581-1592699 bp CRISPR array Location: 1623424-1624116 bp Num of repeats: 11 Spacers: s9-s18 CRISPR array Location: 1623424-1624116 bp Num of repeats: 11 Spacers: s9-s18 CRISPR array Location: 1705642-1705867 bp Num of repeats: 4 Spacers: s19-s21 CRISPR array Location: 1705642-1705867 bp Num of repeats: 4 Spacers: s19-s21 CRISPR array Location: 1865793-1866215 bp Num of repeats: 7 Spacers: s22-s27 CRISPR array Location: 1865793-1866215 bp Num of repeats: 7 Spacers: s22-s27 CRISPR array Location: 2175292-2175453 bp Num of repeats: 3 Spacers: s28-s29 CRISPR array Location: 2175292-2175453 bp Num of repeats: 3 Spacers: s28-s29 CRISPR array Location: 2217664-2218151 bp Num of repeats: 8 Spacers: s30-s36 CRISPR array Location: 2217664-2218151 bp Num of repeats: 8 Spacers: s30-s36 CRISPR array Location: 2219951-2220111 bp Num of repeats: 3 Spacers: s37-s38 CRISPR array Location: 2219951-2220111 bp Num of repeats: 3 Spacers: s37-s38 CRISPR array Location: 2220346-2220571 bp Num of repeats: 4 Spacers: s39-s41 CRISPR array Location: 2220346-2220571 bp Num of repeats: 4 Spacers: s39-s41 CRISPR array Location: 2223405-2223761 bp Num of repeats: 6 Spacers: s42-s46 CRISPR array Location: 2223405-2223761 bp Num of repeats: 6 Spacers: s42-s46 CRISPR array Location: 2258329-2259146 bp Num of repeats: 13 Spacers: s47-s58 CRISPR array Location: 2258329-2259146 bp Num of repeats: 13 Spacers: s47-s58 CRISPR array Location: 2277219-2278241 bp Num of repeats: 16 Spacers: s59-s73 CRISPR array Location: 2277219-2278241 bp Num of repeats: 16 Spacers: s59-s73 Gene: cd09641:cas3HD Type: Type-I Location: 2747663-2750071 bp Gene: cd09693:cas5 Type: Type-I Location: 2750098-2750904 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2750920-2751933 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2751953-2753428 bp Gene: pfam01881:cas6 Type: other Location: 2753433-2754170 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2754429-2755538 bp CRISPR array Location: 3325715-3327592 bp Num of repeats: 29 Spacers: s74-s101 CRISPR array Location: 3325715-3327592 bp Num of repeats: 29 Spacers: s74-s101 Gene: cd09725:cas2 Type: universal Location: 3327776-3328042 bp Gene: cd09722:cas1 Type: universal Location: 3328045-3329025 bp Gene: pfam01930:cas4 Type: Type-I Location: 3329028-3329546 bp Gene: COG1203:cas3 Type: Type-I Location: 3329594-3331915 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 3331926-3332627 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3332629-3333543 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3333545-3335422 bp Gene: pfam01881:cas6 Type: other Location: 3335428-3336222 bp Gene: pfam13280:WYL Type: other Location: 3336243-3337157 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1301813-1302306 bp]: array | spacers
           [Locus range 1510479-1510573 bp]: array | spacers
           [Locus range 1623424-1624116 bp]: array | spacers
           [Locus range 1705642-1705867 bp]: array | spacers
           [Locus range 1865793-1866215 bp]: array | spacers
           [Locus range 2175292-2175453 bp]: array | spacers
           [Locus range 2217664-2218151 bp]: array | spacers
           [Locus range 2219951-2220111 bp]: array | spacers
           [Locus range 2220346-2220571 bp]: array | spacers
           [Locus range 2223405-2223761 bp]: array | spacers
           [Locus range 2258329-2259146 bp]: array | spacers
           [Locus range 2277219-2278241 bp]: array | spacers
           [Locus range 3325715-3327592 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)