CRISPRone

CRISPRone report for GCA_001971875.1_ASM197187v1

♦ Seq 1: MTVU01000001.1 Clostridioides difficile strain 20110960 scaffold00001, whole genome shotgun sequence

⇒Summary: seq-len = 3709382 bp; # of CRISPR array = 7; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1376295-1376390 bp 2 Locus 2: 1589008-1589169 bp 3 Locus 3: 1698428-1698918 bp 4 Locus 4: 1789767-1792822 bp 5 Locus 5: 1934061-1934481 bp 6 Locus 6: 2726921-2737879 bp 7 Locus 7: 2789089-2798812 bp 8 Locus 8: 2878599-2878824 bp Zoom in on locus 1 x2 Zoom in on locus 2 x3 Zoom in on locus 3 x8 Zoom in on locus 4 x4 x3 Zoom in on locus 5 x7 Zoom in on locus 6 Zoom in on locus 7 Zoom in on locus 8 x4 CRISPR array Location: 1376295-1376390 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 1376295-1376390 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 1589008-1589169 bp Num of repeats: 3 Spacers: s2-s3 CRISPR array Location: 1589008-1589169 bp Num of repeats: 3 Spacers: s2-s3 CRISPR array Location: 1698428-1698918 bp Num of repeats: 8 Spacers: s4-s10 CRISPR array Location: 1698428-1698918 bp Num of repeats: 8 Spacers: s4-s10 CRISPR array Location: 1789767-1789994 bp Num of repeats: 4 Spacers: s11-s13 CRISPR array Location: 1789767-1789994 bp Num of repeats: 4 Spacers: s11-s13 CRISPR array Location: 1792661-1792822 bp Num of repeats: 3 Spacers: s14-s15 CRISPR array Location: 1792661-1792822 bp Num of repeats: 3 Spacers: s14-s15 CRISPR array Location: 1934061-1934481 bp Num of repeats: 7 Spacers: s16-s21 CRISPR array Location: 1934061-1934481 bp Num of repeats: 7 Spacers: s16-s21 Gene: cd06127:DEDDh Type: Type-I Location: 2726921-2727427 bp Gene: unk Type: unknown Location: 2727586-2728254 bp Gene: unk Type: unknown Location: 2728667-2729173 bp Gene: cd06127:DEDDh Type: Type-I Location: 2729545-2730582 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 2737394-2737879 bp Gene: cd09641:cas3HD Type: Type-I Location: 2789089-2791497 bp Gene: cd09693:cas5 Type: Type-I Location: 2791524-2792321 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2792337-2793350 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2793370-2794836 bp Gene: pfam01881:cas6 Type: other Location: 2794841-2795578 bp Gene: unk Type: unknown Location: 2795892-2796350 bp Gene: cas14:cas14 Type: Type-V Location: 2796378-2797550 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2797703-2798812 bp CRISPR array Location: 2878599-2878824 bp Num of repeats: 4 Spacers: s22-s24 CRISPR array Location: 2878599-2878824 bp Num of repeats: 4 Spacers: s22-s24 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1376295-1376390 bp]: array | spacers
           [Locus range 1589008-1589169 bp]: array | spacers
           [Locus range 1698428-1698918 bp]: array | spacers
           [Locus range 1789767-1789994 bp]: array | spacers
           [Locus range 1792661-1792822 bp]: array | spacers
           [Locus range 1934061-1934481 bp]: array | spacers
           [Locus range 2878599-2878824 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)