CRISPRone

CRISPRone report for GCA_001971905.1_ASM197190v1

♦ Seq 1: MTVV01000004.1 Clostridioides difficile strain 20110961 scaffold00004, whole genome shotgun sequence

⇒Summary: seq-len = 2828902 bp; # of CRISPR array = 9; # of cas gene = 20  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 192029-193184 bp 2 Locus 2: 433074-434026 bp 3 Locus 3: 544329-544690 bp 4 Locus 4: 624043-624268 bp 5 Locus 5: 764068-766611 bp 6 Locus 6: 1430588-1432139 bp 7 Locus 7: 1597503-1605821 bp 8 Locus 8: 1679101-1679790 bp 9 Locus 9: 2177232-2189256 bp 10 Locus 10: 2388571-2395588 bp Zoom in on locus 1 x18 Zoom in on locus 2 x15 Zoom in on locus 3 x6 Zoom in on locus 4 x4 Zoom in on locus 5 x39 Zoom in on locus 6 x24 Zoom in on locus 7 Zoom in on locus 8 x11 Zoom in on locus 9 x38 Zoom in on locus 10 x13 CRISPR array Location: 192029-193184 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 192029-193184 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 433074-434026 bp Num of repeats: 15 Spacers: s18-s31 CRISPR array Location: 433074-434026 bp Num of repeats: 15 Spacers: s18-s31 CRISPR array Location: 544329-544690 bp Num of repeats: 6 Spacers: s32-s36 CRISPR array Location: 544329-544690 bp Num of repeats: 6 Spacers: s32-s36 CRISPR array Location: 624043-624268 bp Num of repeats: 4 Spacers: s37-s39 CRISPR array Location: 624043-624268 bp Num of repeats: 4 Spacers: s37-s39 CRISPR array Location: 764068-766611 bp Num of repeats: 39 Spacers: s40-s77 CRISPR array Location: 764068-766611 bp Num of repeats: 39 Spacers: s40-s77 CRISPR array Location: 1430588-1432139 bp Num of repeats: 24 Spacers: s78-s100 CRISPR array Location: 1430588-1432139 bp Num of repeats: 24 Spacers: s78-s100 Gene: cd09641:cas3HD Type: Type-I Location: 1597503-1599911 bp Gene: cd09693:cas5 Type: Type-I Location: 1599938-1600735 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1600751-1601764 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 1601784-1603259 bp Gene: pfam01881:cas6 Type: other Location: 1603264-1604001 bp Gene: unk Type: unknown Location: 1604102-1604278 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 1604712-1605821 bp CRISPR array Location: 1679101-1679790 bp Num of repeats: 11 Spacers: s101-s110 CRISPR array Location: 1679101-1679790 bp Num of repeats: 11 Spacers: s101-s110 CRISPR array Location: 2177232-2179691 bp Num of repeats: 38 Spacers: s111-s147 CRISPR array Location: 2177232-2179691 bp Num of repeats: 38 Spacers: s111-s147 Gene: cd09725:cas2 Type: universal Location: 2179875-2180141 bp Gene: cd09722:cas1 Type: universal Location: 2180144-2181124 bp Gene: pfam01930:cas4 Type: Type-I Location: 2181127-2181645 bp Gene: cd09641:cas3HD Type: Type-I Location: 2181693-2184014 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 2184025-2184726 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2184728-2185642 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 2185644-2187521 bp Gene: pfam01881:cas6 Type: other Location: 2187527-2188321 bp Gene: pfam13280:WYL Type: other Location: 2188342-2189256 bp CRISPR array Location: 2388571-2389386 bp Num of repeats: 13 Spacers: s148-s159 CRISPR array Location: 2388571-2389386 bp Num of repeats: 13 Spacers: s148-s159 Gene: COG1203:cas3 Type: Type-I Location: 2389952-2391934 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2391945-2393015 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 2393036-2394184 bp Gene: pfam01881:cas6 Type: other Location: 2394186-2394950 bp Gene: cd09693:cas5 Type: Type-I Location: 2394941-2395588 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 192029-193184 bp]: array | spacers
           [Locus range 433074-434026 bp]: array | spacers
           [Locus range 544329-544690 bp]: array | spacers
           [Locus range 624043-624268 bp]: array | spacers
           [Locus range 764068-766611 bp]: array | spacers
           [Locus range 1430588-1432139 bp]: array | spacers
           [Locus range 1679101-1679790 bp]: array | spacers
           [Locus range 2177232-2179691 bp]: array | spacers
           [Locus range 2388571-2389386 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)