CRISPRone

CRISPRone report for GCA_001971925.1_ASM197192v1

♦ Seq 1: MTWB01000002.1 Clostridioides difficile strain 20111163 scaffold00002, whole genome shotgun sequence

⇒Summary: seq-len = 571515 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 198398-198952 bp 2 Locus 2: 406442-407264 bp 3 Locus 3: 517592-518216 bp Zoom in on locus 1 x9 Zoom in on locus 2 x13 Zoom in on locus 3 x10 CRISPR array Location: 198398-198952 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 198398-198952 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 406442-407264 bp Num of repeats: 13 Spacers: s9-s20 CRISPR array Location: 406442-407264 bp Num of repeats: 13 Spacers: s9-s20 CRISPR array Location: 517592-518216 bp Num of repeats: 10 Spacers: s21-s29 CRISPR array Location: 517592-518216 bp Num of repeats: 10 Spacers: s21-s29 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 198398-198952 bp]: array | spacers
           [Locus range 406442-407264 bp]: array | spacers
           [Locus range 517592-518216 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MTWB01000004.1 Clostridioides difficile strain 20111163 scaffold00004, whole genome shotgun sequence

⇒Summary: seq-len = 1552316 bp; # of CRISPR array = 3; # of cas gene = 20  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 144182-152047 bp 2 Locus 2: 225317-225410 bp 3 Locus 3: 737555-748433 bp 4 Locus 4: 971652-979068 bp Zoom in on locus 1 Zoom in on locus 2 x2 Zoom in on locus 3 x21 Zoom in on locus 4 x19 Gene: cd09641:cas3HD Type: Type-I Location: 144182-146590 bp Gene: cd09693:cas5 Type: Type-I Location: 146617-147414 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 147430-148443 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 148463-149938 bp Gene: pfam01881:cas6 Type: other Location: 149943-150680 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 150938-152047 bp CRISPR array Location: 225317-225410 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 225317-225410 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 737555-738895 bp Num of repeats: 21 Spacers: s2-s21 CRISPR array Location: 737555-738895 bp Num of repeats: 21 Spacers: s2-s21 Gene: cd09725:cas2 Type: universal Location: 739079-739345 bp Gene: cd09722:cas1 Type: universal Location: 739348-740328 bp Gene: pfam01930:cas4 Type: Type-I Location: 740331-740849 bp Gene: COG1203:cas3 Type: Type-I Location: 740897-743218 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 743229-743930 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 743932-744846 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 744848-746698 bp Gene: pfam01881:cas6 Type: other Location: 746704-747498 bp Gene: pfam13280:WYL Type: other Location: 747519-748433 bp CRISPR array Location: 971652-972865 bp Num of repeats: 19 Spacers: s22-s39 CRISPR array Location: 971652-972865 bp Num of repeats: 19 Spacers: s22-s39 Gene: COG1203:cas3 Type: Type-I Location: 973432-975414 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 975425-976495 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 976516-977664 bp Gene: pfam01881:cas6 Type: other Location: 977666-978430 bp Gene: cd09693:cas5 Type: Type-I Location: 978421-979068 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 225317-225410 bp]: array | spacers
           [Locus range 737555-738895 bp]: array | spacers
           [Locus range 971652-972865 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MTWB01000003.1 Clostridioides difficile strain 20111163 scaffold00003, whole genome shotgun sequence

⇒Summary: seq-len = 849084 bp; # of CRISPR array = 5; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8829-10152 bp 2 Locus 2: 148290-149303 bp 3 Locus 3: 467061-467155 bp 4 Locus 4: 827804-828426 bp Zoom in on locus 1 x6 x6 Zoom in on locus 2 x16 Zoom in on locus 3 x2 Zoom in on locus 4 x10 CRISPR array Location: 8829-9190 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 8829-9190 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 9793-10152 bp Num of repeats: 6 Spacers: s6-s10 CRISPR array Location: 9793-10152 bp Num of repeats: 6 Spacers: s6-s10 CRISPR array Location: 148290-149303 bp Num of repeats: 16 Spacers: s11-s25 CRISPR array Location: 148290-149303 bp Num of repeats: 16 Spacers: s11-s25 CRISPR array Location: 467061-467155 bp Num of repeats: 2 Spacers: s26-s26 CRISPR array Location: 467061-467155 bp Num of repeats: 2 Spacers: s26-s26 CRISPR array Location: 827804-828426 bp Num of repeats: 10 Spacers: s27-s35 CRISPR array Location: 827804-828426 bp Num of repeats: 10 Spacers: s27-s35 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8829-9190 bp]: array | spacers
           [Locus range 9793-10152 bp]: array | spacers
           [Locus range 148290-149303 bp]: array | spacers
           [Locus range 467061-467155 bp]: array | spacers
           [Locus range 827804-828426 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)