CRISPRone

CRISPRone report for GCA_001971935.1_ASM197193v1

♦ Seq 1: MTWC01000003.1 Clostridioides difficile strain 20120014 scaffold00003, whole genome shotgun sequence

⇒Summary: seq-len = 4040081 bp; # of CRISPR array = 9; # of cas gene = 15  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1391031-1392245 bp 2 Locus 2: 1501273-1501767 bp 3 Locus 3: 1592420-1593874 bp 4 Locus 4: 1731286-1732174 bp 5 Locus 5: 2058311-2058472 bp 6 Locus 6: 2414167-2414922 bp 7 Locus 7: 2580443-2588780 bp 8 Locus 8: 2662005-2662961 bp 9 Locus 9: 3186077-3197354 bp Zoom in on locus 1 x19 Zoom in on locus 2 x8 Zoom in on locus 3 x7 x7 Zoom in on locus 4 x14 Zoom in on locus 5 x3 Zoom in on locus 6 x12 Zoom in on locus 7 Zoom in on locus 8 x15 Zoom in on locus 9 x27 CRISPR array Location: 1391031-1392245 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 1391031-1392245 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 1501273-1501767 bp Num of repeats: 8 Spacers: s19-s25 CRISPR array Location: 1501273-1501767 bp Num of repeats: 8 Spacers: s19-s25 CRISPR array Location: 1592420-1592847 bp Num of repeats: 7 Spacers: s26-s31 CRISPR array Location: 1592420-1592847 bp Num of repeats: 7 Spacers: s26-s31 CRISPR array Location: 1593450-1593874 bp Num of repeats: 7 Spacers: s32-s37 CRISPR array Location: 1593450-1593874 bp Num of repeats: 7 Spacers: s32-s37 CRISPR array Location: 1731286-1732174 bp Num of repeats: 14 Spacers: s38-s50 CRISPR array Location: 1731286-1732174 bp Num of repeats: 14 Spacers: s38-s50 CRISPR array Location: 2058311-2058472 bp Num of repeats: 3 Spacers: s51-s52 CRISPR array Location: 2058311-2058472 bp Num of repeats: 3 Spacers: s51-s52 CRISPR array Location: 2414167-2414922 bp Num of repeats: 12 Spacers: s53-s63 CRISPR array Location: 2414167-2414922 bp Num of repeats: 12 Spacers: s53-s63 Gene: cd09641:cas3HD Type: Type-I Location: 2580443-2582851 bp Gene: cd09693:cas5 Type: Type-I Location: 2582878-2583684 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2583700-2584713 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2584732-2586198 bp Gene: pfam01881:cas6 Type: other Location: 2586203-2586940 bp Gene: unk Type: unknown Location: 2587041-2587217 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2587671-2588780 bp CRISPR array Location: 2662005-2662961 bp Num of repeats: 15 Spacers: s64-s77 CRISPR array Location: 2662005-2662961 bp Num of repeats: 15 Spacers: s64-s77 CRISPR array Location: 3186077-3187816 bp Num of repeats: 27 Spacers: s78-s103 CRISPR array Location: 3186077-3187816 bp Num of repeats: 27 Spacers: s78-s103 Gene: cd09725:cas2 Type: universal Location: 3188000-3188266 bp Gene: cd09722:cas1 Type: universal Location: 3188269-3189249 bp Gene: pfam01930:cas4 Type: Type-I Location: 3189252-3189770 bp Gene: COG1203:cas3 Type: Type-I Location: 3189818-3192139 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 3192150-3192851 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3192853-3193767 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3193769-3195619 bp Gene: pfam01881:cas6 Type: other Location: 3195625-3196419 bp Gene: pfam13280:WYL Type: other Location: 3196440-3197354 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1391031-1392245 bp]: array | spacers
           [Locus range 1501273-1501767 bp]: array | spacers
           [Locus range 1592420-1592847 bp]: array | spacers
           [Locus range 1593450-1593874 bp]: array | spacers
           [Locus range 1731286-1732174 bp]: array | spacers
           [Locus range 2058311-2058472 bp]: array | spacers
           [Locus range 2414167-2414922 bp]: array | spacers
           [Locus range 2662005-2662961 bp]: array | spacers
           [Locus range 3186077-3187816 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)