CRISPRone

CRISPRone report for GCA_001971945.1_ASM197194v1

♦ Seq 1: MTVW01000001.1 Clostridioides difficile strain 20110973 scaffold00001, whole genome shotgun sequence

⇒Summary: seq-len = 4093719 bp; # of CRISPR array = 9; # of cas gene = 15  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1296057-1296416 bp 2 Locus 2: 1504530-1504825 bp 3 Locus 3: 1615149-1616239 bp 4 Locus 4: 1791638-1792721 bp 5 Locus 5: 2110590-2110749 bp 6 Locus 6: 2161662-2163068 bp 7 Locus 7: 2512208-2513222 bp 8 Locus 8: 2675200-2683065 bp 9 Locus 9: 2756333-2756890 bp 10 Locus 10: 3260249-3271549 bp Zoom in on locus 1 x6 Zoom in on locus 2 x5 Zoom in on locus 3 x17 Zoom in on locus 4 x17 Zoom in on locus 5 x3 Zoom in on locus 6 x22 Zoom in on locus 7 x16 Zoom in on locus 8 Zoom in on locus 9 x9 Zoom in on locus 10 x27 CRISPR array Location: 1296057-1296416 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 1296057-1296416 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 1504530-1504825 bp Num of repeats: 5 Spacers: s6-s9 CRISPR array Location: 1504530-1504825 bp Num of repeats: 5 Spacers: s6-s9 CRISPR array Location: 1615149-1616239 bp Num of repeats: 17 Spacers: s10-s25 CRISPR array Location: 1615149-1616239 bp Num of repeats: 17 Spacers: s10-s25 CRISPR array Location: 1791638-1792721 bp Num of repeats: 17 Spacers: s26-s41 CRISPR array Location: 1791638-1792721 bp Num of repeats: 17 Spacers: s26-s41 CRISPR array Location: 2110590-2110749 bp Num of repeats: 3 Spacers: s42-s43 CRISPR array Location: 2110590-2110749 bp Num of repeats: 3 Spacers: s42-s43 CRISPR array Location: 2161662-2163068 bp Num of repeats: 22 Spacers: s44-s64 CRISPR array Location: 2161662-2163068 bp Num of repeats: 22 Spacers: s44-s64 CRISPR array Location: 2512208-2513222 bp Num of repeats: 16 Spacers: s65-s79 CRISPR array Location: 2512208-2513222 bp Num of repeats: 16 Spacers: s65-s79 Gene: cd09641:cas3HD Type: Type-I Location: 2675200-2677608 bp Gene: cd09693:cas5 Type: Type-I Location: 2677635-2678432 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2678448-2679461 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2679481-2680956 bp Gene: pfam01881:cas6 Type: other Location: 2680961-2681698 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2681956-2683065 bp CRISPR array Location: 2756333-2756890 bp Num of repeats: 9 Spacers: s80-s87 CRISPR array Location: 2756333-2756890 bp Num of repeats: 9 Spacers: s80-s87 CRISPR array Location: 3260249-3261984 bp Num of repeats: 27 Spacers: s88-s113 CRISPR array Location: 3260249-3261984 bp Num of repeats: 27 Spacers: s88-s113 Gene: cd09725:cas2 Type: universal Location: 3262168-3262434 bp Gene: cd09722:cas1 Type: universal Location: 3262437-3263417 bp Gene: pfam01930:cas4 Type: Type-I Location: 3263420-3263938 bp Gene: COG1203:cas3 Type: Type-I Location: 3263986-3266307 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 3266318-3267019 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3267021-3267935 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3267937-3269814 bp Gene: pfam01881:cas6 Type: other Location: 3269820-3270614 bp Gene: pfam13280:WYL Type: other Location: 3270635-3271549 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1296057-1296416 bp]: array | spacers
           [Locus range 1504530-1504825 bp]: array | spacers
           [Locus range 1615149-1616239 bp]: array | spacers
           [Locus range 1791638-1792721 bp]: array | spacers
           [Locus range 2110590-2110749 bp]: array | spacers
           [Locus range 2161662-2163068 bp]: array | spacers
           [Locus range 2512208-2513222 bp]: array | spacers
           [Locus range 2756333-2756890 bp]: array | spacers
           [Locus range 3260249-3261984 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)